Plant FIBer expression Database

Potri.002G060300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G201300
[exp]
229 / 2e-74 AT1G06540 42 / 6e-05 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G060300.1 pacid=42777118 polypeptide=Potri.002G060300.1.p locus=Potri.002G060300 ID=Potri.002G060300.1.v4.1 annot-version=v4.1
ATGGAGGAGGCTTCAAATGGGAAGATTGAGGAACGACAGGAAGTTATTGAGGAAGTTGAGGTTGTCGGTTCCGGGGCTAAGCTGGCGAGAGAAGTTGTTA
TTGATAGTACTTCTGAGCTAGTGAAAGAAAGTCTTGATGAGAGCATTTCGAGTTTGGATGGCAGCAATGGTTCAAACGAAGAGGCAGAAGCTAAAGAGAA
AAATGCTCAAGTGGAGGAAGCGGCGATACTAGAAGTGGTGGAGAAAGAGGTGGTTGATACAGCTGTTGGATCAACCGAGTTTGTTGTATCTGTGGTGGAA
AAATTGACTGAAACTATTGAAGCGTCAGTGGAGAAATTGGAAAATTCTGATGTGGTTGAAGAAGAAGTGAAAGAAACCAAAGAGAAGGTTTCTGATGTGG
TTGATGTTGTATCTGTGTCTTTGAATGAGACTGATGTGATTCCTCCAGCTGTCACAGATCAGACTGATGGGGAATTACCTGAGGTGGTATTGAATGCAAC
AGATGGGTCGTTTCCTGCTGTAACAGAAGTAGTGTCTGAAAAAGTTGAGGAGAAAGTGTTGCAATCTTATGAAGAAAGCAATGCCGCTCCTCCAGCTTTG
ACCGATGCAGAGTCAAAGGGTAGCGAGGAAGTGAAGCAGGCTGCTTTGGAGGAAAATATTGGGGAATCATCGATTAATGTTGACAGGGAAACTGTGGAAA
ATGTCGAATCTACTACTGTAGTTGGAAGCAGTGATGCTTTTCCTGAAACCACAGGAACTACGCCTATTATATCACTTCGACAGCGTAACCTGCGCCCATC
TTGGAAGAGCTGCTGTGGCCTTTTTGAAGCTCTGCGGCCCTCCGATAGATAA
AA sequence
>Potri.002G060300.1 pacid=42777118 polypeptide=Potri.002G060300.1.p locus=Potri.002G060300 ID=Potri.002G060300.1.v4.1 annot-version=v4.1
MEEASNGKIEERQEVIEEVEVVGSGAKLAREVVIDSTSELVKESLDESISSLDGSNGSNEEAEAKEKNAQVEEAAILEVVEKEVVDTAVGSTEFVVSVVE
KLTETIEASVEKLENSDVVEEEVKETKEKVSDVVDVVSVSLNETDVIPPAVTDQTDGELPEVVLNATDGSFPAVTEVVSEKVEEKVLQSYEESNAAPPAL
TDAESKGSEEVKQAALEENIGESSINVDRETVENVESTTVVGSSDAFPETTGTTPIISLRQRNLRPSWKSCCGLFEALRPSDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G060300
[exp]
0 1
AT1G09850 XBCP3 xylem bark cysteine peptidase ... Potri.004G057700
[exp]
5.91 0.8175
AT1G61720 BAN BANYULS, NAD(P)-binding Rossma... Potri.004G030700
[exp]
10.39 0.7727 BAN.2,ANR/BAN1
AT4G18160 KCO6, ATTPK3, A... Ca2+ activated outward rectify... Potri.002G059200
[exp]
11.04 0.7836
AT3G59030 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALI... Potri.005G207600
[exp]
11.09 0.7815
AT3G59030 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALI... Potri.005G207500
[exp]
13.41 0.7690
AT5G13930 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE ... Potri.014G145100
[exp]
18.33 0.7427 Pt-CHS.7
AT3G59310 Eukaryotic protein of unknown ... Potri.003G030800
[exp]
18.81 0.7615
AT5G42800 M318, TT3, DFR dihydroflavonol 4-reductase (.... Potri.002G033600
[exp]
18.97 0.7406 DFR1,Pt-DFR.2
AT1G75290 NAD(P)-binding Rossmann-fold s... Potri.015G050200
[exp]
21.23 0.7395
AT2G23910 NAD(P)-binding Rossmann-fold s... Potri.001G140700
[exp]
24.28 0.7402

Potri.002G060300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.