Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58830 354 / 1e-121 haloacid dehalogenase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201100 [exp] 423 / 1e-150 AT3G58830 340 / 3e-118 haloacid dehalogenase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020774 [exp] 398 / 1e-138 AT3G58830 341 / 2e-116 haloacid dehalogenase (HAD) superfamily protein (.1) Lus10007350 [exp] 393 / 1e-136 AT3G58830 338 / 2e-115 haloacid dehalogenase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13242 [poplar] [flax] Hydrolase_like HAD-hyrolase-like
Representative CDS sequence Show only first row Show all	>Potri.002G060600.1 pacid=42778997 polypeptide=Potri.002G060600.1.p locus=Potri.002G060600 ID=Potri.002G060600.1.v4.1 annot-version=v4.1 ATGCAGTGCACCACCACCACCTATGTGGCTCCCTTACCCGGCTGTCCCATGCCAACTTCTCTTCACTCCCATCTTCATCGTTCCCATCTCAGAATCGTAA AATCCACCTGCTTGTACTCTTCACAGCACCAAACACACTCCAAAAACATATGCTCCCTCGCTCTTCACCCTACAAGCAATTGTAAAAGAAACGGCAAAGA GCAAAAAAATTCCCAAACTAACAATAATAAAGGCTACCCGGACCCAGATCAGAACCTTTCAGTTTTTGACCGATTTCAATGTTCTTTAGACACTAACACC AACGCTAACCAAAACCCAGAAACCGAAAACCAAGAAATTGAAGAAACAGGAGACACCGAAACTGGTAATCAGAGAGGGCCTTTATCAAACATGTGGTGGA CGGATTTGAGAGCTGCATTAGGCCAAAGAATTAACGTTGAAGGCATTGTTTCTTCGGCTTCCGTGTTTGTTAAGGACCGGCATTTGGCTCTGCCTCATGT TGTAGTGCCTGACATAAGGTACATCGACTGGGGAGGGTTGCAAGCGAGAGGCTTTAAAGGTGTGGTGTTTGATAAGGATAACACTATTACTGTGCCTTAC TCTTTGACGCTTTGGGGTCCTCTTAGTCCGTCCATTGAGAGGTGTAAATCTGTTTTCGGGAATGATATTGCCGTGTTCAGTAACTCTGCTGGTCTCTTTG AGTATGATCATGATGGCTCAAAAGCCAGGGCACTTGAGAAGGCAATTGGAATTAAAGTAATAAGGCACAGGGTAAAGAAACCTGCTGGAACATCTGAAGA AATTGAAAAGCACTTTGGCTGTAAATCCTCACAACTTATAATGGTGGGTGATCGGCCTTTCACAGATATTGTTTATGGAAATCGAAATGGCTTTTTGACA GTATTAACGAAGCCACTGAGTCTTGCAGAGGAACCATTCATTGTTAGGCAGGTGCGGAAACTAGAAACCTCTCTTATGGGCTATTGGTTTAAACGAGGAT TGAAGCCAATCAGTCATAATCTATTGCCAGATGCCATGCAATGCGTCAAAGATCCACCACCTCAGTAG
AA sequence Show only first row Show all	>Potri.002G060600.1 pacid=42778997 polypeptide=Potri.002G060600.1.p locus=Potri.002G060600 ID=Potri.002G060600.1.v4.1 annot-version=v4.1 MQCTTTTYVAPLPGCPMPTSLHSHLHRSHLRIVKSTCLYSSQHQTHSKNICSLALHPTSNCKRNGKEQKNSQTNNNKGYPDPDQNLSVFDRFQCSLDTNT NANQNPETENQEIEETGDTETGNQRGPLSNMWWTDLRAALGQRINVEGIVSSASVFVKDRHLALPHVVVPDIRYIDWGGLQARGFKGVVFDKDNTITVPY SLTLWGPLSPSIERCKSVFGNDIAVFSNSAGLFEYDHDGSKARALEKAIGIKVIRHRVKKPAGTSEEIEKHFGCKSSQLIMVGDRPFTDIVYGNRNGFLT VLTKPLSLAEEPFIVRQVRKLETSLMGYWFKRGLKPISHNLLPDAMQCVKDPPPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	0	1
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	1.00	0.9865
AT3G22690			unknown protein		Potri.013G044700 [exp]	2.00	0.9844
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	2.44	0.9808
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	3.46	0.9827
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	4.00	0.9794
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	4.47	0.9815
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.015G086500 [exp]	5.19	0.9780	CTRNP.1
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	5.29	0.9825
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	5.74	0.9767
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Potri.004G087100 [exp]	7.54	0.9715

Compare expression of checked genes

Potri.002G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.