Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP718.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42850 582 / 0 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G36110 297 / 8e-96 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT5G45340 265 / 1e-83 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 259 / 3e-81 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT2G29090 252 / 3e-78 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT3G19270 234 / 2e-71 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G12740 221 / 1e-66 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G38970 216 / 1e-64 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT3G30180 214 / 4e-64 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G05690 213 / 1e-63 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G017800 [exp] 314 / 3e-102 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001500 [exp] 307 / 2e-99 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.007G002400 [exp] 301 / 5e-97 AT5G36110 585 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001300 [exp] 298 / 4e-96 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 296 / 3e-95 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003000 [exp] 296 / 5e-95 AT5G36110 389 / 3e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.012G115000 [exp] 293 / 4e-94 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017700 [exp] 293 / 4e-94 AT5G36110 304 / 2e-98 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G078600 [exp] 293 / 5e-94 AT5G36110 476 / 2e-165 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010940 [exp] 626 / 0 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10040055 [exp] 297 / 2e-95 AT5G36110 318 / 7e-104 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Lus10035685 [exp] 253 / 1e-78 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10034768 [exp] 250 / 1e-77 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10033308 [exp] 246 / 6e-76 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10012675 [exp] 234 / 2e-71 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10042652 [exp] 229 / 3e-69 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 228 / 3e-69 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10024495 [exp] 228 / 7e-69 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10019858 [exp] 223 / 7e-67 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G060700.1 pacid=42779187 polypeptide=Potri.002G060700.1.p locus=Potri.002G060700 ID=Potri.002G060700.1.v4.1 annot-version=v4.1 ATGACCATACAAATATGCTCTTTGCTTTTCTGGGCTTTGTTTTGCTCAACAGCAATGCTCCTCGCCATTTTTTTGAAACACAGAAAAGGCTGCGGCAAGA GTGATGGAAAACTACCACCAGGGGAAATGGGACTTCCTTGGATCGGTGAAACAATAGAGTTCTACAGATCACAACGTGACAACCAATTGTTCGAAGAGTT TGTTCAACCACGGATCACAAAATATGGAAAGATATTCAAAACGAGGCTAATGGGTTCTCCAACAATCATCGTTAATGGTGCTGAAGCTAACCGGTTTTTC TTGTCCAACGAATTCAAGTTGGTAGTTAGCTCATGGCCTACTGCATCAGTTCAGCTCATGGGCATAAATTCCATCATGGAAAAGCAAGGGGAGAAGCACC GATGCCTTCGTGGAATAATCGCCACCAGCCTTGGCCCTGCAGGGCTTGAGATTTTAGTGCCAAAAATTTGCGACTCAGTTCAATTGTACCTAGATAAAAA TTGGAATGTAAGAGAAGAGATCAGTCTTTACCATTCGACCAAAGCCTTGACGTTTACTATAGTTTTGGAGTGCTTGCTAGGGCTCAATTTTGAGCCTGGA ACCCTGAATACTTTTGAGAGAGTTTTGGAAGGAGTTTTTGCACCACCTATTTCATTTCCTGGTTCCAAGTTTTCAAGAGCCAAGAAAGCAAGGCGGGAGA TAAAAGAAATGTTGATTAAAGTAGTAAGGGAGAAAAGGAAGAAGATGGAAAGTGGTTTAGGGGGGGATGAAGGAATGTTATTTTCCCAATTGGTAAGCGG GATGATTCGAGGGGAGATCAGTGAAGAGGAGGTTGTTGATAATGTGGTTTTGCTAGTGTTTGCAGCTCATGACACAACATCTTTTGCCATTGCCATGACC TTCAAAATGTTAGCTGAGCATCCAGACTGCCATTCTCTCCTCCTTCAAGAACATGATGACATAATGAACAAGAGGAGATCTGGAGAAAATCTAACAATGG AAGACACGAAGAAAATGAAATATACATGGCAAGTTGCACGTGAAAGCATGCGGCTTTTTCCTCCTATCTTTGGCTCCTTCAGAAAAGCTATTGCTGACAT TGAATATGAAGGATTCACGATTCCCAAAGGGTGGAAGGTTCTGTGGACAACATATGGCACCCACTACAATGAAGAATATTTCAAGGATCCTCTGACTTTT AATCCAAGAAGATTTGAGGAGCCAATTCCACCATATGCTTACCTTCCCTTCGGTGGAGGACCAAGACTTTGTGCAGGAAACCAACTGGCAAAGTTGAATA TCCTCATCTTCATCCACTATGTTGTAACGCGTTACAATTGGTCCTTACTCTGCCCTGGTGAACAAATCACCATGGACCCTCTCCCATTCCCTTCCCATGG AATGCCCATCAAAGTTTCTCTCAAGTCATCTTAG
AA sequence Show only first row Show all	>Potri.002G060700.1 pacid=42779187 polypeptide=Potri.002G060700.1.p locus=Potri.002G060700 ID=Potri.002G060700.1.v4.1 annot-version=v4.1 MTIQICSLLFWALFCSTAMLLAIFLKHRKGCGKSDGKLPPGEMGLPWIGETIEFYRSQRDNQLFEEFVQPRITKYGKIFKTRLMGSPTIIVNGAEANRFF LSNEFKLVVSSWPTASVQLMGINSIMEKQGEKHRCLRGIIATSLGPAGLEILVPKICDSVQLYLDKNWNVREEISLYHSTKALTFTIVLECLLGLNFEPG TLNTFERVLEGVFAPPISFPGSKFSRAKKARREIKEMLIKVVREKRKKMESGLGGDEGMLFSQLVSGMIRGEISEEEVVDNVVLLVFAAHDTTSFAIAMT FKMLAEHPDCHSLLLQEHDDIMNKRRSGENLTMEDTKKMKYTWQVARESMRLFPPIFGSFRKAIADIEYEGFTIPKGWKVLWTTYGTHYNEEYFKDPLTF NPRRFEEPIPPYAYLPFGGGPRLCAGNQLAKLNILIFIHYVVTRYNWSLLCPGEQITMDPLPFPSHGMPIKVSLKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.002G060700 [exp]	0	1	CYP718.1
AT3G50760		GATL2	galacturonosyltransferase-like...		Potri.005G128000 [exp]	6.92	0.7554
AT1G45688			unknown protein		Potri.002G124600 [exp]	8.24	0.7633
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Potri.010G242300 [exp]	10.95	0.7145
AT4G02550			unknown protein		Potri.006G146100 [exp]	61.92	0.7251
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	67.64	0.7191
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.006G245000 [exp]	68.41	0.6453	Pt-ATKC1.4
AT2G20650			RING/U-box superfamily protein...		Potri.001G400600 [exp]	90.52	0.6547
					Potri.010G194650 [exp]	93.72	0.6790
					Potri.006G260300 [exp]	98.81	0.6419
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	120.63	0.6638

Compare expression of checked genes

Potri.002G060700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.