Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42840 167 / 3e-50 PDF1 protodermal factor 1 (.1) AT2G16630 43 / 0.0001 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200900 [exp] 225 / 9e-73 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.005G224600 [exp] 48 / 7e-07 AT2G20515 177 / 8e-58 unknown protein Potri.002G038200 [exp] 45 / 6e-06 AT2G20515 189 / 2e-62 unknown protein Potri.004G169200 [exp] 44 / 5e-05 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007351 [exp] 189 / 9e-59 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10031390 [exp] 174 / 7e-53 AT2G42840 / protodermal factor 1 (.1) Lus10010941 [exp] 174 / 9e-53 AT2G42840 169 / 2e-50 protodermal factor 1 (.1) Lus10007352 [exp] 162 / 7e-51 AT2G42840 132 / 3e-39 protodermal factor 1 (.1) Lus10026279 [exp] 47 / 1e-05 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10022928 [exp] 44 / 3e-05 AT2G20515 173 / 3e-56 unknown protein Lus10042394 [exp] 44 / 5e-05 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10024890 [exp] 40 / 0.0004 AT2G20515 154 / 2e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G060800.1 pacid=42779410 polypeptide=Potri.002G060800.1.p locus=Potri.002G060800 ID=Potri.002G060800.1.v4.1 annot-version=v4.1 ATGGAGAAGCAGGAAAGCAAGCAGGCTTCAATGTTGATGTGGGTTTTGGCCGCTGGCTTGCTTTCTCACAACTTGGCGTTCCCTGTATTGGCCACAACCT TTGAAGATCAAAAGAACTACTACTCCCCAGATCCACATTCAAGAAGTCCCCCTTCTGGTTCACACAGGACCCCTTCACATGGTTCAGGAGGTAGCTCTGT TAACCCACCATCTCACTCAACGCCATCAACTCCTTCAGGTGGAGGCTACAATCCAACACCATCAGTCCCTTCAGGTGGAAATTGTGGAACCCCGCCAAGT GTACCTACTCCATCAACACCATCAAACCCTCCGCGAGGAGGTGGATACCACCCCACCCCTCCAACCACAGGAGGCAGTCCCCCAACACCAGTCATTGTAA GCCCACCAACCACCCCAAGTATTACTCCAGGCACCCCTTTCACCCCCACGCCTCCGTTCATTCCTGACCCAAATTCACCCTTCTCATGCAATTACTGGAG AACTCACCCTGCACTAATATGGGGTGTTTTGGGCTGGTGGGGAACAATGGGAAACGCATTTGGTGTGACTAGGTTGCCAGGATTTGGAACGAGTATGACC TTGCAGCAAGCACTTTCAAACACACGTACTGATGGGTATGGGACACTCTACCGAGAAGGTACTGCTTCCTTGCTCAACTCCATGGTGAGCAACAGGTTCC CTTTCACAACCAGGCAAGTCAGGGAGAATTTCGTTGCTTCACTAGCCTCCAACAAGGCTGCAGGAGCACAGGGACATCTTTTCAAGCTGGCCAATGAGGG CAGACTCAAGCCCAGAGTCTGA
AA sequence Show only first row Show all	>Potri.002G060800.1 pacid=42779410 polypeptide=Potri.002G060800.1.p locus=Potri.002G060800 ID=Potri.002G060800.1.v4.1 annot-version=v4.1 MEKQESKQASMLMWVLAAGLLSHNLAFPVLATTFEDQKNYYSPDPHSRSPPSGSHRTPSHGSGGSSVNPPSHSTPSTPSGGGYNPTPSVPSGGNCGTPPS VPTPSTPSNPPRGGGYHPTPPTTGGSPPTPVIVSPPTTPSITPGTPFTPTPPFIPDPNSPFSCNYWRTHPALIWGVLGWWGTMGNAFGVTRLPGFGTSMT LQQALSNTRTDGYGTLYREGTASLLNSMVSNRFPFTTRQVRENFVASLASNKAAGAQGHLFKLANEGRLKPRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.002G060800 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Potri.010G089050 [exp]	1.41	0.9901
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	1.73	0.9885
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.003G192650 [exp]	2.44	0.9903
AT1G75580			SAUR-like auxin-responsive pro...		Potri.005G237200 [exp]	3.00	0.9827	SAUR31
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140400 [exp]	4.24	0.9784
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Potri.010G167500 [exp]	5.09	0.9816
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140600 [exp]	6.00	0.9878
AT5G19875			unknown protein		Potri.003G216000 [exp]	7.74	0.9818
AT4G08910			unknown protein		Potri.014G150900 [exp]	9.74	0.9854
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G120100 [exp]	10.39	0.9840

Compare expression of checked genes

Potri.002G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.