Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21940 224 / 2e-72 ATSK1 shikimate kinase 1 (.1.2.3.4.5) AT4G39540 217 / 1e-69 ATSK2 shikimate kinase 2 (.1.2.3) AT3G26900 117 / 2e-31 ATSKL1 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G084600 [exp] 228 / 6e-74 AT2G21940 304 / 2e-103 shikimate kinase 1 (.1.2.3.4.5) Potri.007G081000 [exp] 218 / 5e-70 AT2G21940 323 / 9e-111 shikimate kinase 1 (.1.2.3.4.5) Potri.017G062800 [exp] 110 / 1e-28 AT3G26900 291 / 9e-99 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035843 [exp] 236 / 8e-77 AT2G21940 304 / 5e-103 shikimate kinase 1 (.1.2.3.4.5) Lus10036626 [exp] 220 / 3e-68 AT5G64860 482 / 1e-165 disproportionating enzyme (.1) Lus10035171 [exp] 89 / 1e-20 AT3G26900 203 / 1e-64 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3) Lus10032000 [exp] 56 / 1e-08 AT3G26900 141 / 5e-40 Arabidopsis thaliana shikimate kinase-like 1, shikimate kinase like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.002G061100.1 pacid=42779724 polypeptide=Potri.002G061100.1.p locus=Potri.002G061100 ID=Potri.002G061100.1.v4.1 annot-version=v4.1 ATGCAGCCCAAAGAACTGCAACTTTGCACCAGTTACATTATTTCTTACAGATTTTGCCATCCTCCTCTAATACTCATACAATGCCGCATGGCAAGAAGAT GCATGATTAACTATGACACTCCTAGAATGGAATCAGGAGATCTTTATGCATTTTTCGATGAAAGGTTGTTGAAGAAAAAGGCGAAAGAGCTTGCCCCATG CTTAAATAGCTGCTGTATATTTCTGATTGGAATGATGGGATGTGGAAAAACAACCGTCGGCAAGGTTTTGTCGGAGGCTCTTGGTTATGCTTTTGTAGAT AGTGACACCTGCGTAGAACAAGCTGTTGGAGAAATCTCAGTGGCTCAAATATTTCAGAAGCATGGTGAGAGTGTGTTCAGAGACAATGAGAGTAAGGCGT TGCAAGAGTTGTCTTTAAAGTCTCAGCAAGTTGTTGCTACCGGCGACGGTGCAGTCCTTCATCCAATCAATTGGGAATACATGAGGAAAGGCATCACTGT CTTTTTAGATGTACCTCTGGATGCCCTTGCAAGGAGAATTGCTGCTGTAGGAACTGATTCCCGTCCTCTTTTGGACTTCGATTCTGGGGATCCTTACACA AAGGCTTTGATGAGATTGTCTACTCTTTTGGAAAAGCGAGTAGAGAAGTGTTCCAGCGCTGATGTTACTGTTTCGCTTTCAAAGCTTGCTGATGATTTGG AAGAGGATGTCTCCCATCTCACGCCAACCATAATAGCAATTGAGGTGCTTGAACAAATCGAGAAGTATTTAAGAGGCAAAAAGAAGACGTTCAACTGA
AA sequence Show only first row Show all	>Potri.002G061100.1 pacid=42779724 polypeptide=Potri.002G061100.1.p locus=Potri.002G061100 ID=Potri.002G061100.1.v4.1 annot-version=v4.1 MQPKELQLCTSYIISYRFCHPPLILIQCRMARRCMINYDTPRMESGDLYAFFDERLLKKKAKELAPCLNSCCIFLIGMMGCGKTTVGKVLSEALGYAFVD SDTCVEQAVGEISVAQIFQKHGESVFRDNESKALQELSLKSQQVVATGDGAVLHPINWEYMRKGITVFLDVPLDALARRIAAVGTDSRPLLDFDSGDPYT KALMRLSTLLEKRVEKCSSADVTVSLSKLADDLEEDVSHLTPTIIAIEVLEQIEKYLRGKKKTFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.002G061100 [exp]	0	1
AT1G19350	BZR	BZR2, BES1	BRASSINAZOLE-RESISTANT 2, BRI1...		Potri.016G125700 [exp]	12.08	0.7023
AT2G45950		ASK20	SKP1-like 20 (.1.2)		Potri.015G146500 [exp]	15.71	0.6539
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	27.12	0.6357
AT1G01020		ARV1	Arv1-like protein (.1.2)		Potri.014G107300 [exp]	35.19	0.6629
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	53.91	0.6427
					Potri.001G014050 [exp]	126.13	0.5694
AT1G75060			unknown protein		Potri.003G130100 [exp]	186.36	0.5601

Compare expression of checked genes

Potri.002G061100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.