Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71800 355 / 2e-117 CSTF64 cleavage stimulating factor 64 (.1) AT1G60000 71 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G61030 69 / 2e-12 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G00830 68 / 6e-12 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G13850 62 / 3e-11 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT4G39260 60 / 4e-11 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G60900 66 / 5e-11 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT4G24770 64 / 7e-11 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G74230 63 / 1e-10 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G23830 60 / 1e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172100 [exp] 71 / 2e-13 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 70 / 4e-13 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G061600 [exp] 69 / 9e-13 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 66 / 2e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G056200 [exp] 68 / 5e-12 AT1G73840 224 / 2e-69 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Potri.015G057400 [exp] 66 / 8e-12 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.011G050400 [exp] 67 / 1e-11 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.002G178200 [exp] 67 / 1e-11 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G125500 [exp] 67 / 2e-11 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014814 [exp] 420 / 1e-142 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 385 / 2e-129 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 382 / 4e-126 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10006055 [exp] 362 / 7e-120 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10017852 [exp] 73 / 3e-14 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 72 / 1e-13 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10021154 [exp] 71 / 2e-13 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 68 / 2e-13 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 67 / 3e-13 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10040519 [exp] 71 / 1e-12 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF14304 [poplar] [flax] CSTF_C Transcription termination and cleavage factor C-terminal CL0221 [poplar] [flax] PF14327 [poplar] [flax] CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2
Representative CDS sequence Show only first row Show all	>Potri.002G061200.5 pacid=42779200 polypeptide=Potri.002G061200.5.p locus=Potri.002G061200 ID=Potri.002G061200.5.v4.1 annot-version=v4.1 ATGGCCTCCTCTTCTCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTACGATGCAACCGAGGAACAGCTAATTGAAATCTGCAGAGAGGTTGGGCCTG TTGTGTCCTTCAGATTAGTAATTGATCGAGAAACTGGGAAACCTAAAGGTTATGGATTCTGTGAATATAAGGATGAAGAGACAGCGCTAAGTGCTCGTCG TAATCTTCAGGGTTATGAGATCAATGGCCGGCAGTTACGGGTTGATTTTGCTGAAAATGACAAAAATGCTGACAGAAACCGAGAACAGGGTCGCGGGGGT CCTCGACTGGCTGCAAATAATGATCCCCAGAAACAAGCAGGGGGTCCAGCAATTCTGGAGGAGCCAGCTCAGCACCAGCCAATTGGTCTCCACATAGCCA TTACTGCTGCAACTGTCATGGCAGGAACTTTAGGTGGTGCTCAGACTGTCATGCAGTCAAATCAAAATGGTTTACAGAGTCAGCCAGCACTAGCAAGTGA CCCCCTGACTCTTCATCTGGCAAAAATGTCTAGAAATCAATTGAATGAAATCATGTCTGAGCTAAAGGGAATGGCTACACAAAACAGGGAAGCAGCTCAC CAGCTGTTACTTGGAAAACCACAGCTGTCAAAAGCTCTTTTTCAGGCACAGATAATGCTTGGAATGGTGACTCCACAAGTGTTGCAGCTCCCAAATATTC GGCAATCAACAGGTCAACCCGCTCTATCTTCATTACAAGATTCTCAACAGGTTCAGCGGCCAGCAGTTCCAAATCTTCCTGGGTTACCCCCTACTGCGCA GAGGATGCAGTTGGGCTTAGGTCAATTTTCTGCTGGTCCACAACCATCTGTTCAGCCTCAGAAGTCTCTGGTTCACAACCAATTTTCTGCAACCCCACAA CCATCTGTTCAAGCTCAAACACAGATTCCACATCATGTCAACAACCATGTTCCTCATCATGCCACATTGTTAGGGCAGTCTGCGCCACTTCCTGCTGTGC TTCCTTCTGTTAGACCACCTGTTCAGATGGCAAACTCTGCACCTCTGAACCAACAAATGCAACCTTCATTGGTACAACATACAAGACAGGTTGGAAATAC GAATGCTAGGCACAACCCTCAGGTGGTTCTTCCCAATAAAGCTATGCAATCTTCTCTTTTATCCCGTCCTCCAGCAACAGGCTCCTTTCAGCAGTCTGGC CTCTCAGTATCATCGGGCCTTTCAGATGCAGCAAATGCTGATAGGTCTACTCTCAGAAGTAATGCATATTTGAACATGCAAACAAGCACAGCTCATGATT CTAAAGAACCAGTTAATCGCCCTTCAAAGGTGTTAAAATTAGATGATGGAAGGAGCATGTCTGTCCCTATGGGAGGTTCTAATTTGTTTAGTGCCACTGG ATCTGGACCATCCCAAGCACCTGCAGTCAATTCGGTTCCTCCAAATCCACTTCCCAGGCCAGAAGATTTGCAGCATTCTGGGAAACAAGCTCCTCAGCTT CCAGCGGACATAGAGTCTGCCTTACTGCAGCAAGTGCTGAACCTCACACCAGAGCAGTTGAGTTCATTGCCACCCGATCAGCAACAGCAAGTTATTCAGC TCCAACAGGCACTTCTGCGAGATCAGATGCAACCATCATAA
AA sequence Show only first row Show all	>Potri.002G061200.5 pacid=42779200 polypeptide=Potri.002G061200.5.p locus=Potri.002G061200 ID=Potri.002G061200.5.v4.1 annot-version=v4.1 MASSSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGG PRLAANNDPQKQAGGPAILEEPAQHQPIGLHIAITAATVMAGTLGGAQTVMQSNQNGLQSQPALASDPLTLHLAKMSRNQLNEIMSELKGMATQNREAAH QLLLGKPQLSKALFQAQIMLGMVTPQVLQLPNIRQSTGQPALSSLQDSQQVQRPAVPNLPGLPPTAQRMQLGLGQFSAGPQPSVQPQKSLVHNQFSATPQ PSVQAQTQIPHHVNNHVPHHATLLGQSAPLPAVLPSVRPPVQMANSAPLNQQMQPSLVQHTRQVGNTNARHNPQVVLPNKAMQSSLLSRPPATGSFQQSG LSVSSGLSDAANADRSTLRSNAYLNMQTSTAHDSKEPVNRPSKVLKLDDGRSMSVPMGGSNLFSATGSGPSQAPAVNSVPPNPLPRPEDLQHSGKQAPQL PADIESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALLRDQMQPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	0	1
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	1.00	0.8951
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	2.00	0.8825
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.014G197200 [exp]	4.89	0.8740
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	5.19	0.8808
AT5G41960			unknown protein		Potri.003G146100 [exp]	6.92	0.8654
AT2G31600			unknown protein		Potri.017G035200 [exp]	7.74	0.8783
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	7.93	0.8682	Pt-ATTIM23.1
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	7.93	0.8654
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	8.83	0.8498
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G090300 [exp]	10.39	0.8483

Compare expression of checked genes

Potri.002G061200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.