Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34190 431 / 6e-145 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 410 / 2e-136 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G32870 239 / 2e-71 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2) AT1G65910 214 / 6e-61 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G09330 209 / 2e-60 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G04410 204 / 5e-58 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT5G64060 196 / 4e-57 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G17730 189 / 6e-56 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 196 / 1e-55 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G10490 188 / 2e-55 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200100 [exp] 927 / 0 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.010G229900 [exp] 211 / 2e-60 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.017G139500 [exp] 213 / 3e-60 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 212 / 5e-60 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.008G031800 [exp] 208 / 1e-59 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.015G030200 [exp] 191 / 2e-56 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.001G144400 [exp] 192 / 2e-55 AT4G17980 318 / 2e-108 NAC domain containing protein 71 (.1) Potri.003G089800 [exp] 191 / 8e-55 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.008G081500 [exp] 188 / 3e-54 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028713 [exp] 501 / 4e-172 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10006054 [exp] 441 / 9e-149 AT1G34190 339 / 9e-110 NAC domain containing protein 17 (.1) Lus10042284 [exp] 195 / 3e-57 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 194 / 4e-57 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 203 / 1e-56 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 204 / 7e-56 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10028824 [exp] 195 / 1e-54 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 191 / 2e-54 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 189 / 8e-54 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10035373 [exp] 187 / 1e-53 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G061300.1 pacid=42778759 polypeptide=Potri.002G061300.1.p locus=Potri.002G061300 ID=Potri.002G061300.1.v4.1 annot-version=v4.1 ATGACGGTGAACGCCGACTCTTGTTTCGGCGCTGATGATAAGGAGTGGCCTCCTGGGTTCAGGTTTCACCCGACAGACGAGGAGCTTGTGGTTTATTACC TGAAGAGGAAGATCTGCAAGAAAAGGTTAAAGCTTAATATTATTCGCGAGGTTGATGTTTACAAGTGGGATCCTGAGGAGTTGCCTGGGCAATCCATTTT GAAGACTGGGGATAGGCAATGGTTCTTCTTCAGTCCCAGGGATAGGAAGTATCCTAATGGAGCAAGAACAAATAGGGCGACAAGACAGGGGTACTGGAAA GCAACAGGGAAGGATCGCATTGTTGTCTGCAATTCTCGAAATGTTGGGGTGAAGAAGACCCTAGTTTTCTACAGAGGCCGTGCACCTAACGGTGATCGAA CTGACTGGGTGATGCATGAGTATTCTTTGGACGAAGAAGAACTTAAGAGATGCTCAAATGTGCAAGATTATTATGCCCTTTACAAGGTTTACAAAAAAAG CGGAGCTGGTCCTAAGAATGGTGAACATTATGGAGCACCATTTAAGGAAGAAGACTGGGCTGATGATGAATTTCAGTGTGTCAATGGCATGTTTACTCCA GATATTCCTGTTAAGAAGCACAATGAAGTGACTCTTGTTGATAATTTCATACAGTCTGCTCAACTTGAGCCGCCACTGAATGATTTTGAGGAGATAATAA AACAAATTGGTGAAGAACCTGCACATAACGAGCTGCAGAACAATGATTTTACTTATTTACTGCCTCAGGTTTGTGTTATGGTTACTGGGGAAGAAGAGGC GCAAAGTACTTTGGTCGATCCATCTTTCAGGGAATTTGTTTGTGAGCCAGCTGGAGAGTTGACAACAAGTGGTCAGCACTGCAATAAACACACCAGCTTT AACTTTGACCAGTCAGGTACCGCAACATTGCAATTGCATGAGGCACCTGAGGTCACATCCGGCACTAACTATGAACAGGCTCCCCAGTTAAATGAAGAGG ATTTCCTGGAAATTAATGATCTCATCGATCCAGAGCCTTCTTTCTCCAATACTGAGCAACCTGTGGAAAACTTGCAGTTTGATGATTTTGATGGATTGAG TGAGTTTGACCTGTACCATGATGCAGCCATGTTTTTGCGTGACATGGGGCCTGTTGATCAGGAAGCAGTTTCACATTCATATATGCATCCCTATGGGTGT GACATGGTTAACCAAGTTGGCTACCAGTTGCAGCCCGATTCAATAATAAATGCGGTGGATTATCAGTTGCAGCAGTCAAACTTGGTGGCCAACCAAGTGG ACTGTGATCTGCAGCCACAATTTTTTGATGCAGAGCAGATGAACAATCAGCTATGGGTTCATGGTCAGAGAAGTAATATGTTAGCTGCTTCAGAATCACA TAACGGGAATCTTTTCCAACCAACTCCAGGTGTTGTGTGTGAATCCAGCAATAATTCTACCAGAACCAACGGAAATCAAGGTGGAAAAGAGGGTGATGCT GCTGATGGTTGGTTCTCTTCTGCCTTGTGGGGTTTTGTGGAGTCCATCCCTACTACTCCTGCGTCAGCTTCAGAGAATCCATTGGTTAATAAGGCTTTTG AGCGAATGTCAAGCTTCAGCAGGATCAAAATGAATGTCAAAAGCATTAATGTTGACGCAGCTAGCAGGATCAGAATGAATGTCAATAGTATTAATGTAGT CGCAGCTAATGGCGCTGCAAGTGTAAGGAGCGCTAGTAGAAATAAGGGATTTGTTTTATTGTCGATTGTTGGAGTCTTGTGTGCCATCTTATGGGTATTC GTAGGTAGTGGTAGATTGTTGGGGAGATCAATCTCCTCATGA
AA sequence Show only first row Show all	>Potri.002G061300.1 pacid=42778759 polypeptide=Potri.002G061300.1.p locus=Potri.002G061300 ID=Potri.002G061300.1.v4.1 annot-version=v4.1 MTVNADSCFGADDKEWPPGFRFHPTDEELVVYYLKRKICKKRLKLNIIREVDVYKWDPEELPGQSILKTGDRQWFFFSPRDRKYPNGARTNRATRQGYWK ATGKDRIVVCNSRNVGVKKTLVFYRGRAPNGDRTDWVMHEYSLDEEELKRCSNVQDYYALYKVYKKSGAGPKNGEHYGAPFKEEDWADDEFQCVNGMFTP DIPVKKHNEVTLVDNFIQSAQLEPPLNDFEEIIKQIGEEPAHNELQNNDFTYLLPQVCVMVTGEEEAQSTLVDPSFREFVCEPAGELTTSGQHCNKHTSF NFDQSGTATLQLHEAPEVTSGTNYEQAPQLNEEDFLEINDLIDPEPSFSNTEQPVENLQFDDFDGLSEFDLYHDAAMFLRDMGPVDQEAVSHSYMHPYGC DMVNQVGYQLQPDSIINAVDYQLQQSNLVANQVDCDLQPQFFDAEQMNNQLWVHGQRSNMLAASESHNGNLFQPTPGVVCESSNNSTRTNGNQGGKEGDA ADGWFSSALWGFVESIPTTPASASENPLVNKAFERMSSFSRIKMNVKSINVDAASRIRMNVNSINVVAANGAASVRSASRNKGFVLLSIVGVLCAILWVF VGSGRLLGRSISS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	0	1
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.017G059600 [exp]	3.00	0.8648	Pt-HSFA5.2
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	3.16	0.8946
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Potri.014G043900 [exp]	4.12	0.8354	Pt-ATPUP11.1
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	4.47	0.8886
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	7.34	0.8334
AT3G59430			unknown protein		Potri.017G029800 [exp]	9.79	0.8121
AT1G61140		EDA16	embryo sac development arrest ...		Potri.011G046400 [exp]	10.39	0.8487
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	11.83	0.8544
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	14.28	0.8581
AT3G51580			unknown protein		Potri.019G058400 [exp]	15.23	0.8517

Compare expression of checked genes

Potri.002G061300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.