Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02450 124 / 3e-35 HSP20-like chaperones superfamily protein (.1.2) AT3G03773 115 / 3e-33 HSP20-like chaperones superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199700 [exp] 228 / 8e-77 AT4G02450 127 / 9e-37 HSP20-like chaperones superfamily protein (.1.2) Potri.013G062600 [exp] 113 / 5e-32 AT3G03773 191 / 3e-63 HSP20-like chaperones superfamily protein (.1.2) Potri.019G038550 [exp] 112 / 5e-32 AT3G03773 197 / 5e-66 HSP20-like chaperones superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024119 [exp] 162 / 9e-52 AT3G03773 121 / 2e-36 HSP20-like chaperones superfamily protein (.1.2) Lus10000340 [exp] 167 / 1e-51 AT4G02450 120 / 5e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10008680 [exp] 161 / 3e-48 AT5G04940 216 / 8e-64 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Lus10026136 [exp] 157 / 5e-48 AT4G02450 122 / 1e-34 HSP20-like chaperones superfamily protein (.1.2) Lus10002623 [exp] 112 / 6e-32 AT3G03773 165 / 2e-53 HSP20-like chaperones superfamily protein (.1.2) Lus10010669 [exp] 112 / 1e-31 AT3G03773 223 / 6e-76 HSP20-like chaperones superfamily protein (.1.2) Lus10020270 [exp] 113 / 2e-29 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF04969 [poplar] [flax] CS CS domain
Representative CDS sequence Show only first row Show all	>Potri.002G061500.2 pacid=42779080 polypeptide=Potri.002G061500.2.p locus=Potri.002G061500 ID=Potri.002G061500.2.v4.1 annot-version=v4.1 ATGAGCCGTCATCCTTCAGTGAAATGGGCCCAGAGGTCCGACAATTTGTTCATCACCGTGCAGCTGCCTGATGCACAGGATGTAAAGCTTAAAATCGAGC CCGAAGGAAAATTTTTCTTCTCTGCTACCAGTGGGGTGGATAAGATACCCTATGAAGTTGAACTTGACCTATTAGACAAGGTCATTGTAGAGGAGAGCAA GGCTAGTACTGGCTCCAGAAGTATCCAGTACATTGTGAAGAAGGCTGAGAATAAATGGTGGAGCAGATTGATAAAACAAACCGGAAAACCTCCAGTGTTC TTGACTGTTGATTGGGATAAATGGATTGATGAGGATGAGGAGTTCACTAGCAAGGGAGCACCTGAGGCTGGGATGGGGGATATGGGTTTTGATTTTCCTA ATCTGAATCTTGGAGGCGGAGGCTTTGACGGGCCTGCTCCTGGAATGGACGATGATGATGAAGATGACACAGAGGATGAGAATGCGGAAGAAGCACCGTC AGCAGAGAAGGAAGTAGCATCCGCTAGTGGCGAAGCAGACACTAAGAAAACTTGA
AA sequence Show only first row Show all	>Potri.002G061500.2 pacid=42779080 polypeptide=Potri.002G061500.2.p locus=Potri.002G061500 ID=Potri.002G061500.2.v4.1 annot-version=v4.1 MSRHPSVKWAQRSDNLFITVQLPDAQDVKLKIEPEGKFFFSATSGVDKIPYEVELDLLDKVIVEESKASTGSRSIQYIVKKAENKWWSRLIKQTGKPPVF LTVDWDKWIDEDEEFTSKGAPEAGMGDMGFDFPNLNLGGGGFDGPAPGMDDDDEDDTEDENAEEAPSAEKEVASASGEADTKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02450			HSP20-like chaperones superfam...		Potri.002G061500 [exp]	0	1
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.005G198800 [exp]	1.00	0.8661	RAB7.1
AT4G36130			Ribosomal protein L2 family (....		Potri.007G013000 [exp]	6.63	0.7711
AT5G50890			alpha/beta-Hydrolases superfam...		Potri.002G058100 [exp]	6.92	0.7294
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	7.34	0.7645
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.008G146200 [exp]	7.93	0.7464
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.009G115000 [exp]	8.77	0.7364	Pt-ACT2.1
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Potri.002G261900 [exp]	13.78	0.7399
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.007G018000 [exp]	15.29	0.7266	Pt-TRXH.1,PtrTrxh4
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Potri.015G132300 [exp]	15.32	0.7519	PBS2.1
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	17.49	0.7208

Compare expression of checked genes

Potri.002G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.