Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34150 474 / 9e-166 Pseudouridine synthase family protein (.1) AT3G06950 97 / 2e-22 Pseudouridine synthase family protein (.1) AT1G20370 50 / 2e-06 Pseudouridine synthase family protein (.1) AT1G09800 49 / 6e-06 Pseudouridine synthase family protein (.1) AT1G76120 48 / 7e-06 Pseudouridine synthase family protein (.1.2) AT2G30320 48 / 1e-05 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G206200 [exp] 92 / 3e-20 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 52 / 8e-07 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.013G154200 [exp] 49 / 6e-06 AT2G30320 486 / 2e-168 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 48 / 8e-06 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.003G008500 [exp] 48 / 9e-06 AT1G09800 458 / 5e-162 Pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023799 [exp] 466 / 4e-164 AT1G34150 422 / 3e-147 Pseudouridine synthase family protein (.1) Lus10039480 [exp] 101 / 3e-23 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10037366 [exp] 67 / 5e-12 AT1G09800 461 / 4e-163 Pseudouridine synthase family protein (.1) Lus10035791 [exp] 58 / 5e-09 AT1G09800 414 / 7e-145 Pseudouridine synthase family protein (.1) Lus10026423 [exp] 57 / 2e-08 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 55 / 6e-08 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [poplar] [flax] PseudoU_synth PF01416 [poplar] [flax] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Potri.002G061650.1 pacid=42779821 polypeptide=Potri.002G061650.1.p locus=Potri.002G061650 ID=Potri.002G061650.1.v4.1 annot-version=v4.1 ATGTCCGAAGAAGCAGAAGAAATCATCAATTTAAGATCTCAAATAACTTTTCTTCAGAACAGAGTCCAAGAATTGGAGGAAGAGAATGCAAAGTTTTCCT CTCGACTCTCAAGCTGTCGCTGTGACGAGTTACAAGAGAAAAAGCCTAAAGAAAAATGTGAAAATCTGGGAGAGGAGAGAGGAGAAATGAATTCTGGGTG CAAGAAGAGTGGAAGAAAGAAAGCCACGCCTAAAACGCCAGGTTATGATACAAGGATCATGAATCACCATCCGAGGAGATATGTTGCTCTTAAAGTCATG TATTTTGGTCAAAGGTTTTATGGTTTTTCTTTGGAGGCACAAATGGATCCGACAGTTGAGTCTGAGATTTTCAAGGCTCTTGAAACGACAAGACTTTTAA TTGGTGATAGGAAGGAAATACAGTACTCGAGATGTGGTAGAACAGACAAGGGAGTTTCTGCTGTTGGGCAAGTGATTGCACTGTATTTACGATCCAAACT CAAGGACATTGATGCACACAACAAACATTCAGGGGAGACTGTTCCAGAAGAACAGGATGGTCAGCCAGAAGGGGAAATTGATTATGTGAGAGTGTTGAAT GGAGTCCTTCCAAAAGACATTCGGATTGTGGGCTGGTGTCCTGTTCCAAGTGACTTCAGTGCAAGGTTCAGCTGTTTGAGCAGGGAATATAAATATTTCT TTTGGAATGACAATTTGAACCTCTTGGTTATGGAGACTGCAGGTAAGAAACTTATTGGGGAACATGACTTCAGAAACTTCTGCAAGATGGATGCAGTGAA GGTGCACAATTATAGGCGAAATGTGATGTCATTTGAGATCTCTCCTTGTGATATGAGATTTGAAGGGCATCAACTTTATGCTATAAAAATTAAAGGTAGT GCTTTCCTGTGGCACCAAGTCCGGTGCATGGTTGCTGTGCTATTTATGATTGGCCAAGGTCTTGAATCCCCTGAAGTAATAGATGCATTACTGGACACCA GGACACTGAGGAAACCCCAGTATCTCATGGCTCCTGAAATTCCGTTGGTTCTTCTATCCTGTGAGTTTGAAGGTCTCAAGTTTTCATGTTCTTCAGATGC TGGGCAAGCGCTGCATGTTCACTTGGAGAATGAATGCCGACTTTACCATCTCCAGGCTGCTATCTTTCAAGAGGCTCTGTTGAGTCATTTGCCTTTGTCA ATTGGTGCAGAAAATAAAGACTCATCTAGCAATGGAGTGACAAGAAAAAAAGCTTCCCATGTTCCCCTCATGTCAAGGGAAACTGAGCCGTCATATGAAG AGCGGCGTGCTAAGCTGGAAACGGTGAAGTTAAGAGCTTGA
AA sequence Show only first row Show all	>Potri.002G061650.1 pacid=42779821 polypeptide=Potri.002G061650.1.p locus=Potri.002G061650 ID=Potri.002G061650.1.v4.1 annot-version=v4.1 MSEEAEEIINLRSQITFLQNRVQELEEENAKFSSRLSSCRCDELQEKKPKEKCENLGEERGEMNSGCKKSGRKKATPKTPGYDTRIMNHHPRRYVALKVM YFGQRFYGFSLEAQMDPTVESEIFKALETTRLLIGDRKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDIDAHNKHSGETVPEEQDGQPEGEIDYVRVLN GVLPKDIRIVGWCPVPSDFSARFSCLSREYKYFFWNDNLNLLVMETAGKKLIGEHDFRNFCKMDAVKVHNYRRNVMSFEISPCDMRFEGHQLYAIKIKGS AFLWHQVRCMVAVLFMIGQGLESPEVIDALLDTRTLRKPQYLMAPEIPLVLLSCEFEGLKFSCSSDAGQALHVHLENECRLYHLQAAIFQEALLSHLPLS IGAENKDSSSNGVTRKKASHVPLMSRETEPSYEERRAKLETVKLRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	0	1
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	1.41	0.9280
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	4.89	0.8969
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	6.32	0.8993
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	7.41	0.8875
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	7.74	0.8553
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.017G126300 [exp]	8.48	0.8929
AT1G80700			unknown protein		Potri.003G180500 [exp]	10.00	0.8780
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	10.39	0.8745
AT5G19300			unknown protein		Potri.010G091400 [exp]	10.53	0.8672
AT5G44010			unknown protein		Potri.014G192200 [exp]	10.72	0.8980

Compare expression of checked genes

Potri.002G061650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.