Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KDSA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79500 531 / 0 ATKDSA1, KDSA Aldolase-type TIM barrel family protein (.1.2.3.4.5) AT1G16340 518 / 0 ATKDSA2, ATKSDA Aldolase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199100 [exp] 555 / 0 AT1G79500 524 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 499 / 1e-172 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009595 [exp] 370 / 3e-130 AT1G79500 374 / 9e-132 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10027741 [exp] 371 / 9e-130 AT1G79500 369 / 4e-129 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10009596 [exp] 372 / 5e-127 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00793 [poplar] [flax] DAHP_synth_1 DAHP synthetase I family
Representative CDS sequence Show only first row Show all	>Potri.002G061900.6 pacid=42778141 polypeptide=Potri.002G061900.6.p locus=Potri.002G061900 ID=Potri.002G061900.6.v4.1 annot-version=v4.1 ATGGATTCCTCAACTGTTTTGTTTAACCAGCTCAAGGCAGCAGAACCATTTTTCTTGCTAGCTGGACCCAATGTGATTGAATCTGAGGAGCACATTCTTA GAATGGCCAACCATCTCAAGACTATCTCAACCAGAGTTGGGTTGCCACTTGTTTTTAAATCAAGCTTTGATAAAGCTAATAGAACATCCTCCAAATCCTT TCGAGGTCCAGGGATGAGCGAAGGGTTGAAGATTCTTGAGAAGGTTAAAATAGCATATGACATCCCCATTGTTACTGATGTGCATGAAACAATTCAGTGT GAACCAGTCGGCCAAGTTGCAGATATCATTCAGATTCCAGCATTTTTGTGTCGTCAGACAGATCTTCTAGTTGCAGCTGCCAAGACTGGAAAAATTATCA ATATTAAGAAAGGCCAATTCTGTGCTCCTTCTGTCATGTCAAATTCTGCTGAGAAGGTAAGATTGGCGGGAAATCCAAATGTCATGGTTTGCGAGAGGGG AACTATGTTTGGCTATAATGATTTGATTGTTGATCCACGTAATTTGGAATGGATAAGGGAAGCTAAATGTCCTGTTGTAGCTGACATCACGCATTCACTA CAACAGCCGGCTGGGAAAAAGTTGGATGGTGGAGGTGTTGCAAGTGGAGGTCTTCGTGAATTGATACCATGCATTGCAAGAACAGCAGTGGCCGTTGGGG TGGATGGAATTTTCATGGAGGTGCATGACGATCCTCTAAATGCCCCAGTGGATGGTCCAACTCAATGGCCTCTGCGCCATTTAGAGGAGCTGCTAGAAGA GCTTGTGGCAATAGCTAAGGTGAGCAAGGGGAAGAAACAAATGGCCATTGATCTCACACCATTTCGCGATTAG
AA sequence Show only first row Show all	>Potri.002G061900.6 pacid=42778141 polypeptide=Potri.002G061900.6.p locus=Potri.002G061900 ID=Potri.002G061900.6.v4.1 annot-version=v4.1 MDSSTVLFNQLKAAEPFFLLAGPNVIESEEHILRMANHLKTISTRVGLPLVFKSSFDKANRTSSKSFRGPGMSEGLKILEKVKIAYDIPIVTDVHETIQC EPVGQVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMSNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWIREAKCPVVADITHSL QQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELVAIAKVSKGKKQMAIDLTPFRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	0	1	KDSA.1
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	1.00	0.9581
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.005G199100 [exp]	1.73	0.9536	Pt-KDSA.2
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	2.00	0.9539
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	2.23	0.9372
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	3.46	0.9454	Pt-FAH1.1
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	4.24	0.9337
AT3G56810			unknown protein		Potri.006G026600 [exp]	5.91	0.9358
AT1G68060		ATMAP70-1	microtubule-associated protein...		Potri.010G106100 [exp]	6.00	0.9229
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Potri.016G121900 [exp]	6.00	0.9295
AT4G02580			NADH-ubiquinone oxidoreductase...		Potri.005G218000 [exp]	6.32	0.9344

Compare expression of checked genes

Potri.002G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.