Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18400 235 / 5e-77 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) AT5G18362 73 / 2e-15 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198900 [exp] 396 / 2e-140 AT5G18400 250 / 5e-83 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010213 [exp] 187 / 2e-58 AT5G18400 214 / 4e-69 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (.1.2.3) Lus10017411 [exp] 85 / 2e-18 AT3G19810 255 / 2e-81 Protein of unknown function (DUF177) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05093 [poplar] [flax] CIAPIN1 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.002G062200.5 pacid=42776731 polypeptide=Potri.002G062200.5.p locus=Potri.002G062200 ID=Potri.002G062200.5.v4.1 annot-version=v4.1 ATGGATACTAAGAGAACGCTGCAGCGTTCTGTGCTGGCTTTAACAGACGAGACTCTTATTTCAGTAAGCAGAGTAGTAAATGCTGCAAGGGGGGACGCGA ATGATGGGGTTGAACAGTGTGATCCTCAAGTTATCACTCAAGCATCATCTTTAAGTAAGCTGCCAGCGGAGCCTTCCTCTGTGGATATTGTGGTTTCCAT CTGCAGTTCGCTTGAATTTCCTGGTGATCTGTTGGTAAAGGAAATTTTTAGAGTGCTGAAGCCTGGTGGAACTATTCTGATTTACAATTCTCAGCAATCT GTTATAGGAGAAACTGACAAGGCAATTTCTGGTCTTCAGCGCAAGTTGCTTTTGGCTGGGTTCTCAGAAGTAGAAGCTCTACAACCAAAATCTGTTGGAC TCTCCAATGCGATTCGTTCTTTTGGGATTCAGGCCAAGAAGCCTTCTTGGAATATTGGGTCATCCTTTGCGCTAAAGAAATCCATAAAATCATCAGTCAA GGTTCAGATTGATGATGATTCAGATTTGATTGATGAGGATAGCCTTTTGACTGAAGAGGATTTGAAGAAACCTCAGCCACCACTTGTTGGTGATTGTGAA GTTGGAAGCACAAGGAAGGCTTGCAAGAACTGCACTTGTGGTAGAGCTGAGGCAGAGGAAACAGTGAAGTTGGGACTCACCACGGATCAGCTGAACAATC CTCAATCAGCATGTGGCAGTTGTTGGCTAGGGGATGCTTTTCGTTGCAGCACATGCCCTTACAAAGGTCTTCCTCCATTCAAACTCGGTGAAAAGGTGTC GCTGTCTGAAAACTTTCTCGTGGCAGACATTTGA
AA sequence Show only first row Show all	>Potri.002G062200.5 pacid=42776731 polypeptide=Potri.002G062200.5.p locus=Potri.002G062200 ID=Potri.002G062200.5.v4.1 annot-version=v4.1 MDTKRTLQRSVLALTDETLISVSRVVNAARGDANDGVEQCDPQVITQASSLSKLPAEPSSVDIVVSICSSLEFPGDLLVKEIFRVLKPGGTILIYNSQQS VIGETDKAISGLQRKLLLAGFSEVEALQPKSVGLSNAIRSFGIQAKKPSWNIGSSFALKKSIKSSVKVQIDDDSDLIDEDSLLTEEDLKKPQPPLVGDCE VGSTRKACKNCTCGRAEAEETVKLGLTTDQLNNPQSACGSCWLGDAFRCSTCPYKGLPPFKLGEKVSLSENFLVADI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18400			Cytokine-induced anti-apoptosi...		Potri.002G062200 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247300 [exp]	2.00	0.7914
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	3.31	0.8160	APGM.2
AT3G24530			AAA-type ATPase family protein...		Potri.006G158600 [exp]	8.48	0.7451
AT4G29520			unknown protein		Potri.018G067300 [exp]	9.79	0.8084
AT2G01810			RING/FYVE/PHD zinc finger supe...		Potri.008G137200 [exp]	15.58	0.7536
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Potri.009G091800 [exp]	24.97	0.7979
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.007G024300 [exp]	28.40	0.6773
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.016G138700 [exp]	36.94	0.7189
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	38.15	0.6957
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G182100 [exp]	48.41	0.7775

Compare expression of checked genes

Potri.002G062200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.