Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAB3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22760 639 / 0 PAB3 poly(A) binding protein 3 (.1) AT1G71770 632 / 0 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 606 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 588 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 551 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G34140 357 / 1e-117 PAB1 poly(A) binding protein 1 (.1) AT2G36660 348 / 1e-111 PAB7 poly(A) binding protein 7 (.1) AT3G16380 337 / 3e-108 PAB6 poly(A) binding protein 6 (.1) AT1G54080 123 / 5e-30 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G14100 117 / 6e-28 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198500 [exp] 998 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G124200 [exp] 639 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 635 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.001G304000 [exp] 625 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 622 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G191500 [exp] 332 / 6e-106 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.002G128100 [exp] 119 / 1e-28 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.014G034600 [exp] 119 / 2e-28 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.007G028300 [exp] 117 / 4e-28 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002835 [exp] 623 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 615 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 614 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 542 / 0 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027733 [exp] 382 / 4e-124 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10014392 [exp] 380 / 2e-123 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 373 / 1e-120 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 383 / 3e-119 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 298 / 9e-93 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 127 / 1e-31 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF00658 [poplar] [flax] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Potri.002G062700.1 pacid=42778554 polypeptide=Potri.002G062700.1.p locus=Potri.002G062700 ID=Potri.002G062700.1.v4.1 annot-version=v4.1 ATGGCTGCAGCGGTTGCGGTACCAGTGGTTACGGATCAAACAGCGGCAGTGGTTGCTCCTGCAGCGGAAACGCCTGCAGCCGAACAGTTTCCGAACAGGT CGCTCTACGTTGGGGATCTGGAGCATAACGTCAAAGAAGGACAACTGTTTGATCTGTTTAGCCAGGTGGCGCCGGTTGTTTCCACTAGGGTTTGTAGGGA TCAGGCTGGACTAACCTCGCTCGGCTATGCTTATGTCAATTTCAGCAATCCTCAAGATGCTGCAAAAGCAATGGAGGTTCTGAACTTCACCCCTTTGAAT GGGAAACCTATCAGAATTATGTTTTCTCATCGTGATCCTACAACAAGGAGAAGTGGACATGCAAATGTCTTTATCAAGAATCTGGACACTAAAATTGATA ACAAGGCTTTGTACGAAACATTTGCTTCCTTTGGGCCTGTCCTTTCCTGCAAAGTAGCTGTTGACAACAATGGTCAATCAAAAGGTTATGGCTTCATACA GTTTGAAAACGAGGAAGATGCTCAGAGTGCAATCAACCGGTTGAATGGCATGTTGGTAAACGATAGAGAAGTTTATGTTGGACCTTTTGTTCGACGCCTA GAAAGGATTGAGGCTAATGGGTCACCAAAATTTACTAATGTTTATGTTAAGAATTTGTCTGAGACAACTTCTGATGAGGACCTTAAGAAAATTTTCAGCA GTTATGGTGCCATCACCAGTGCAATTGTTATGAAGGACCAAAATGGGAAATCCAGAGGTTTTGGTTTTGTGAACTTCCAGAGCCCAGATTCTGCTGCTGC TGCTGTTGAGAAGTTGAATGGGATGACCTTCAGTGATAAGGTTTGGTATGTTGGGAGGGCCCAAAGGAAAGGAGAAAGGGAGGCAGAGTTGAAAGCCAAG TTTGAACAGGAAAGAAATAGCAGATATGAGAAAATGAAGGCTGCTAATCTCTACCTAAAAAATCTTGGTGACACCATTGACGAAGAAAGATTGAAGGAAT TATTTTCTGAGTTTGGATCTATAACATCATGCAAGGTCATGCTTGATCAACAAGGGTTAAGTAAGGGCTCTGGTTTTGTTGCCTTTTCTACACCAGAGGA AGCTTCAAGAGCTTTGAGTGAAATGAATGGAAAGATGATAGGAAAGAAACCCCTGTATGTAGCCATTGCCCAACGCAGAGAAGAAAGGATGGCTCGGCTG CAGGCACATTTTTCCCAAATTCAGGCACCTGGACTGCCAACTTTACCTTCAGGACTTCCTGGATATCATCCTGGCACACCTAGGCTTGCACCACACCAGC TCTATTTTGGCCAAGGAACTCCTGGCATGATGCCCCCTCAGCCTGCAGGCTACAGTTTCCAGCCGCAACTCTTGCCTGGAATGCGTGCTGCTGTTGGCCC CAACTTTGTTATGCCGTATCAGCTGCAAAGGCAAGGACAACAGGGGCAGAGGATGGGTATGCGGCCTGGAGGGAACCACCAACAGATGCAGCAGCAGCAG CTATTGCACCGGAATACTAATCAGGGTGTAAGATACGTGGGCAACGCAAGAAATGGCATAGATTCATCTGTGGTTCCGCAAGGTTTTGTTGGTCCAGTGA TGCCGTTGCCCTTTGAGGCTTCAGGGATGCCTATAACTCCTAGTCATGCCCAGCCAACCACTCCAGTGCCCATTTCAACTCTCACAACCGCTCTGGCTTC TGCTACACCGGAGAACCGCATGATGATGCTGGGTGAACAGCTTTATCCCCTTGTGGAATGTCTGGAGCCAGATCATGTGGCAAAGGTGACTGGGATGTTA TTGGAGATGGATCAAACAGAGGTGCTACATCTTATTGAATCTCCAGATGCTCTCAAGAAAAAGGTGGCTGAGGCAATGCAAGTCCTTCAGGAAGCTGGTG CTTCTAGCGTTGGTGATCAACCTGGCTCCTTGGCACTCAATGAATGA
AA sequence Show only first row Show all	>Potri.002G062700.1 pacid=42778554 polypeptide=Potri.002G062700.1.p locus=Potri.002G062700 ID=Potri.002G062700.1.v4.1 annot-version=v4.1 MAAAVAVPVVTDQTAAVVAPAAETPAAEQFPNRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVLNFTPLN GKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRL ERIEANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELKAK FEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARL QAHFSQIQAPGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQPAGYSFQPQLLPGMRAAVGPNFVMPYQLQRQGQQGQRMGMRPGGNHQQMQQQQ LLHRNTNQGVRYVGNARNGIDSSVVPQGFVGPVMPLPFEASGMPITPSHAQPTTPVPISTLTTALASATPENRMMMLGEQLYPLVECLEPDHVAKVTGML LEMDQTEVLHLIESPDALKKKVAEAMQVLQEAGASSVGDQPGSLALNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.002G062700 [exp]	0	1	PAB3.1
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	9.27	0.8472	SAUR5
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.010G132500 [exp]	12.40	0.8482
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	12.48	0.8404
AT5G44860			unknown protein		Potri.012G125800 [exp]	16.12	0.8243
AT3G51580			unknown protein		Potri.016G136900 [exp]	16.97	0.8278
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	20.37	0.8375	Pt-APY1.4
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	22.20	0.8009
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	23.10	0.8404
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.011G153300 [exp]	23.36	0.8182
AT2G27090			Protein of unknown function (D...		Potri.004G197700 [exp]	24.81	0.7836

Compare expression of checked genes

Potri.002G062700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.