Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71760 183 / 6e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030260 [exp] 146 / 6e-43 AT1G71760 135 / 4e-39 unknown protein Lus10004010 [exp] 66 / 7e-13 AT1G71760 52 / 2e-08 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15749 [poplar] [flax] MRNIP MRN-interacting protein
Representative CDS sequence Show only first row Show all	>Potri.002G062800.3 pacid=42778861 polypeptide=Potri.002G062800.3.p locus=Potri.002G062800 ID=Potri.002G062800.3.v4.1 annot-version=v4.1 ATGCAGACGATTTTCATAGCCCTACAGTGCTACCAGTGCTCCACGATGCAGGTGAAGCAAAAGAAGAAGAGCAGCAACAAGTGGACATGCGTAGTTTGCA ACCAGAAGCAGTCCGTAAGGAAAGTCTTTGCTCAAGGTTGCTTGGCTAAAGACCTCCGCAAGTTTGTCCAATCATTCAACATGTCTCGCAAAATCGCTGA CGAACAAGACTCCCTCGATCAAGATGCAGTGCTAATCCCAACATCAGAAACTGATCATATTGGGTTAAATGAAGATTGCCAGAGAAAGAGGCGCTCTGAT TGGACTGAGTACCTTGATGCAGAGGAAGAATATAATATTAAACAAGAGGACGAAGGGGAGGAACCTGGGCTAATGGTCGTGACAGAGTTGCCCAAGGAGA TGTTTAAGAAACCCAGATTGAAGAATGATTTTGGGCAGAATAGTGGAGATCATGGCGATGGAAATCTGTACAAGCCGGTTTTTTCAAAGAGAAATGCTAG CAAAATTCCCATGTCTCGAGACAAGGAATCAAGGAAATATCAGTCTACAAAGCCTGCTGGCAATTCAAAATGGAGTGATTGCATGACACAGGCTGAGGAG GAGGAAAGGATTTCCCAGCCGACAACGGGGAAAACCAAGGCTTCCAAATGGAAAGATTACATAACGCAAGATGAAGATGGTTTTAACTCTGGGAGGGGGA GAAATGTTGGAGCTCACCACCAGAACTGTGGTGATTGGGAGAACATATTGGATGACGATCAGAAGGTAGAAGATGATGTCCACCCAGACTTCATGTAA
AA sequence Show only first row Show all	>Potri.002G062800.3 pacid=42778861 polypeptide=Potri.002G062800.3.p locus=Potri.002G062800 ID=Potri.002G062800.3.v4.1 annot-version=v4.1 MQTIFIALQCYQCSTMQVKQKKKSSNKWTCVVCNQKQSVRKVFAQGCLAKDLRKFVQSFNMSRKIADEQDSLDQDAVLIPTSETDHIGLNEDCQRKRRSD WTEYLDAEEEYNIKQEDEGEEPGLMVVTELPKEMFKKPRLKNDFGQNSGDHGDGNLYKPVFSKRNASKIPMSRDKESRKYQSTKPAGNSKWSDCMTQAEE EERISQPTTGKTKASKWKDYITQDEDGFNSGRGRNVGAHHQNCGDWENILDDDQKVEDDVHPDFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71760			unknown protein		Potri.002G062800 [exp]	0	1
AT3G63480			ATP binding microtubule motor ...		Potri.005G038900 [exp]	5.83	0.9027
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Potri.015G009632 [exp]	7.48	0.8944
AT5G65120			unknown protein		Potri.007G090500 [exp]	9.89	0.9114
AT4G35930			F-box family protein (.1)		Potri.005G110200 [exp]	11.13	0.8997
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	12.04	0.8993
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Potri.001G225600 [exp]	13.19	0.8990	SYN3.1
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	18.43	0.8895
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	18.76	0.8950
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129740 [exp]	19.44	0.8963
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.012G075300 [exp]	19.89	0.8950	DEL2,DEL1.2

Compare expression of checked genes

Potri.002G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.