Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34110 1400 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 805 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 765 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 708 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 692 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 603 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 587 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 580 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 574 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 550 / 1e-177 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198000 [exp] 1745 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 795 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 792 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 766 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 756 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G088100 [exp] 730 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 723 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 710 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 703 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000509 [exp] 1485 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 1476 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 789 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 734 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 723 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 707 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 688 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 578 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 564 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 546 / 4e-179 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G063300.1 pacid=42779986 polypeptide=Potri.002G063300.1.p locus=Potri.002G063300 ID=Potri.002G063300.1.v4.1 annot-version=v4.1 ATGGAGAAGCCAAGCCACCATTCCCTCTTGTTTTGCTCATTCTTGGTAATGATGATAACCAGTACCAAAACATTTTTTGTAGTCTCCCTATCCTCTGATG GAGAAGCCCTTCTTTCTCTTATCTCAGCAGCAGACCAATCAGCAAAAGCATCCTCACCAATCCTCTCCTCATGGAACCCATCAAGCCCAACTCCATGTTC ATGGCAAGGCATTACGTGCTCTCCACAAAATAGAGTTACTTCCCTTTCTCTCCCTAACACGTTCCTTAATCTTTCCTCGCTGCCCTCACAACTCTCCTCT CTTTCCTCTCTACAACTTGTCAATCTCTCCTCGACTAATATCTCTGGCGCTATCCCTCCTTCATTTGGCCTACTCACCCATCTTAGACTCTTAGACCTCT CTTCTAACTCTCTTTCTGGTACTATACCACAGGAACTTGGCCAGCTCTCTTCCCTTCAGTTTCTTTACTTGAACTCCAATAAATTATCTGGTAGGATACC TCCCCAACTCGCAAACCTTACTTTTTTACAAGTTCTTTGCTTACAAGACAATCTCTTCAATGGTTCAATACCATCTCAATTGGGTTCTTTAGTCTCGCTC CAAGAATTTAGAGTTGGAGGCAATCCTTTTCTTACAGGAGAAATACCGGTACAATTAGGACTGCTAACCAATCTCACAACATTTGGTGCTGCAGCAACTG GTCTTTCAGGGGTATTACCACCCACATTTGGGAACTTGATCAATCTTCAAACTCTGTCTCTTTATGACACGGAGGTATTTGGTTCTATACCACCTGAACT CGGTTTGTGTTCAGAGTTAAGGAACTTGTACTTGCACATGAATAAGCTCACTGGTTCAATCCCTCCTCAACTGGGTAAGTTGCAAAAACTTACTAGTCTG CTTCTCTGGGGAAATGCACTATCTGGAGCAATCCCAGCTGAACTTTCAAATTGTTCATCACTTGTTTTGCTTGATGCTTCAGCTAACGATCTTTCAGGAG AAATACCTGCTGATTTAGGAAAGTTAGTGTTTCTCGAGCAGCTTCACTTGTCTGATAATTCACTTACTGGTTTAATACCCTGGCAGTTGAGTAACTGTAC AAGTTTAACTGCTCTCCAGCTTGACAAGAACCAACTGTCAGGCACAATTCCATGGCAGGTTGGCAATTTGAAGTATTTGCAAAGTTTATTCTTGTGGGGT AATTTAGTGTCTGGTACAATACCAGCCTCTTTTGGGAACTGCACAGAATTATATGCTCTTGATCTTTCAAGAAACAAGCTCACAGGCTCAATTCCAGAAG AGATTTTCAGTTTGAAGAAATTGAGCAAACTTCTGCTTCTAGGGAATTCATTATCAGGGGGGTTGCCTCGCACTGTTGCAAATTGTGAATCTTTAGTGAG ATTGAGGCTTGGAGAAAACCAGCTTTCAGGTCATATTCCCAAGGAGATAGGCCAGTTGCAGAATTTGGTATTTCTGGACTTGTATATGAATCATTTCTCT GGTGGCCTACCTTTGGAGATTGCCAACATCACGGTTCTTGAGCTGTTGGATGTGCACAACAACTACATTACTGGAGAGATACCATCTCTACTAGGAGAGC TTGTTAATTTGGAGCAGCTTGATCTTAGCAGGAACAGCTTCACAGGTGAAATTCCTTGGAGTTTTGGAAACTTCAGTTACCTGAACAAGCTCATTCTCAA TAACAATCTGCTCACAGGGGCAATCCCAAGGTCCATCCGAAACTTGCAGAAGCTAACGCTGCTTGATTTGAGCTATAACAGCCTCTCGGGTCCAATCCCA CCTGAAATTGGTTATGTCACAAGCTTAACAATTAGTTTGGATTTAAGCTTAAATGGATTTACCGGTGAACTTCCTGAAACGATGTCTAGCTTGACATTGT TACAGTCACTTGATCTTTCCCGTAATTTCCTTTATGGAAAGATTAAGGTTCTAGGTTCCCTTACTAGCCTAACTTCCCTTAATATCTCCTACAATAACTT TTCAGGCCCAATTCCTGTATCACCATTCTTCAGAACTCTATCTTCAAATTCATACCTACAAAACCCAAGACTTTGTGAATCCACAGATGGTACTTCTTGT TCTTCGAGAATAGTTCAAAGAAATGGATTAAAATCAGCCAAAACTGTAGCTTTGATTTTAGTTATTCTGGCTTCAGTTACCATTATAGTTATTGCTTCCT TGGTTATAGTCGTGCGGAACCATAGGTATGCAATGGAGAAATCTTCTGGAGCATTAACAGCTTCATCAGGAGCCGAAGATTTCTCCTATCCATGGACTTT CATCCCATTTCAGAAGCTTAACTTCACCGTTGATAACATCCTAGATTGCTTGAAGGAGGAGAATGTGATCGGGAAAGGCTGTTCTGGGATTGTTTACAAG GCTGAGATGCCAAATGGGCAGTTGATAGCTGTGAAAAAGCTCTGGAAAACAAAACAAGATGAGGATCCGGTGGATTCTTTTGCTGCAGAAATTCAAATTC TTGGACACATTCGACACCGGAATATCGTGAAGCTTTTAGGCTATTGTTCGAATAGGAGTGTCAAGCTCCTTCTGTACAACTACATTTCAAATGGCAATCT GCAACAGCTTCTGCAGGGGAATAGGAACCTGGATTGGGAAACGAGGTACAAGATAGCTGTTGGTTCAGCTCAGGGTCTAGCTTATCTTCATCATGATTGC GTGCCAACAATTCTTCACAGAGATGTAAAGTGCAACAACATACTTCTGGATTCAAAGCATGAGGCCTATTTGGCAGATTTTGGCCTGGCCAAACTGATGA ACTCTACAAATTATCATCATGCCATGTCCAGAGTAGCTGGGTCTTATGGTTATATAGCCCCAGAGTATGGATACACCATGAACATTACAGAAAAGAGTGA TGTTTACAGTTATGGAGTGGTATTGCTAGAGATCATAAGTGGCCGCAGTGCTGTTGAGCCTCATTTAGGAGATGGATTACACATAGTTGAGTGGGTGAAG AAAAAGATGGGAAGCTTTGAACCAGCTGTATCGATACTAGATGCAAAACTTCAAGGTTTGCCGGACCAAATGGTGCAGGAAATGCTGCAAACACTAGGAA TTGCAATGTTCTGTGTGAACTCTTCGCCTGCAGAGCGCCCCACCATGAAGGAGGTGGTGGCATTGTTAATGGAAGTAAAGAGTCCACCGGAAGAATGGGG AAAGACTTCTCAACCTCTAATAAAACAGTCATCGAATCAAAGTTGA
AA sequence Show only first row Show all	>Potri.002G063300.1 pacid=42779986 polypeptide=Potri.002G063300.1.p locus=Potri.002G063300 ID=Potri.002G063300.1.v4.1 annot-version=v4.1 MEKPSHHSLLFCSFLVMMITSTKTFFVVSLSSDGEALLSLISAADQSAKASSPILSSWNPSSPTPCSWQGITCSPQNRVTSLSLPNTFLNLSSLPSQLSS LSSLQLVNLSSTNISGAIPPSFGLLTHLRLLDLSSNSLSGTIPQELGQLSSLQFLYLNSNKLSGRIPPQLANLTFLQVLCLQDNLFNGSIPSQLGSLVSL QEFRVGGNPFLTGEIPVQLGLLTNLTTFGAAATGLSGVLPPTFGNLINLQTLSLYDTEVFGSIPPELGLCSELRNLYLHMNKLTGSIPPQLGKLQKLTSL LLWGNALSGAIPAELSNCSSLVLLDASANDLSGEIPADLGKLVFLEQLHLSDNSLTGLIPWQLSNCTSLTALQLDKNQLSGTIPWQVGNLKYLQSLFLWG NLVSGTIPASFGNCTELYALDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLSGGLPRTVANCESLVRLRLGENQLSGHIPKEIGQLQNLVFLDLYMNHFS GGLPLEIANITVLELLDVHNNYITGEIPSLLGELVNLEQLDLSRNSFTGEIPWSFGNFSYLNKLILNNNLLTGAIPRSIRNLQKLTLLDLSYNSLSGPIP PEIGYVTSLTISLDLSLNGFTGELPETMSSLTLLQSLDLSRNFLYGKIKVLGSLTSLTSLNISYNNFSGPIPVSPFFRTLSSNSYLQNPRLCESTDGTSC SSRIVQRNGLKSAKTVALILVILASVTIIVIASLVIVVRNHRYAMEKSSGALTASSGAEDFSYPWTFIPFQKLNFTVDNILDCLKEENVIGKGCSGIVYK AEMPNGQLIAVKKLWKTKQDEDPVDSFAAEIQILGHIRHRNIVKLLGYCSNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDC VPTILHRDVKCNNILLDSKHEAYLADFGLAKLMNSTNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEIISGRSAVEPHLGDGLHIVEWVK KKMGSFEPAVSILDAKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34110			Leucine-rich receptor-like pro...		Potri.002G063300 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	1.41	0.9674	Pt-HMGR3.2
AT2G46850			Protein kinase superfamily pro...		Potri.002G181100 [exp]	9.00	0.9107
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	9.48	0.9099	8
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	10.09	0.9328
AT4G34419			unknown protein		Potri.009G102800 [exp]	12.48	0.9323
AT3G20898			unknown protein		Potri.006G053600 [exp]	13.49	0.9135
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	14.83	0.9099
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	15.23	0.9289
AT4G28650			Leucine-rich repeat transmembr...		Potri.002G256500 [exp]	16.97	0.8702
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.007G050300 [exp]	19.28	0.8705	GH3-1

Compare expression of checked genes

Potri.002G063300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.