Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71720 514 / 1e-179 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT5G30510 105 / 3e-24 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 50 / 3e-06 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197900 [exp] 894 / 0 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 92 / 8e-20 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 87 / 4e-18 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 51 / 1e-06 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028698 [exp] 542 / 0 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10028726 [exp] 528 / 0 AT1G71720 506 / 8e-177 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 88 / 3e-18 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 85 / 2e-17 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10022587 [exp] 61 / 7e-10 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10021484 [exp] 54 / 2e-07 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G063400.1 pacid=42777887 polypeptide=Potri.002G063400.1.p locus=Potri.002G063400 ID=Potri.002G063400.1.v4.1 annot-version=v4.1 ATGCAAATCCTTCTTCTTCAACCCTGTAAGTCTCTCACTCTCTTCAGCTATTCACTACCATCCAATACTGACAGCTTAGTTATCACACATAAGAGGAGCA TAGTCCATCATAACAAGTGTGCAAAACCCCCCTGTTTTCACTCATTTTGTAGTCTGGGGACACTTAAAGCCATTTTTTTGTCTAAGAATTCCCAACTTTG GAAAAGTTCCCTCGTTACATTATGCTCCCAAAATGATGTCTTTGATGATTTTTCGAGTACCCAACTGCCTGAAAAGGAACGGGATGATAGAATTCAAGTG AATGAGGAGCTTGAATTGTTAAATAAGCCATCTCCAGTGATTTTTAATAATGGTTTGGATGTAGAAGCTGATAAAGAATCTGAGAAACCTGGTAAAGATG AGGCCTTGGCGCCTTTTTTGAAGTTCTTCAAGTCTAATGATTCATTGGATGAAGTGAGTGAGGATGAGCGTGATTTAGGTGTTGTAGAGGAGAGAAGTGG TGTGGATAATGAAGACAAGGAGCCTAGGAAGATTAATGTGGACTATTATGAGCCAAAACCTGGTGATTTTGTGGTTGGAGTTGTGGTTTCTGGCAATGAG AATAAACTTGATGTGAATATCGGGGCAGACTTGTTGGGTACAATGCTAACAAAGGAGGTGCTGCCTTTGTATGACAAAGAGATGGAATTTTTGTTGTGCG ATACAAAGAAGGATGTCAAGGAGTTCATGGTTAAAGGGAAGATGGGGATTGTTAAGGACGAGGTTGCAATGAGTCCAGGCCCCCCAGGGTTAGGGAAGCC GGTTGTGGAGACAGGAACAGTGCTGTTTTCAGAGGTTCTTGGAAGGACGCTTAGTGGAAGGCCATTACTTTCTACCAGACGGCTTTTCCGGCGGTTAGCT TGGCAACGAGTGAGGCAGATCAAAGATCTGAATGAACCTATTGAGATTAAAATTTCAGAATGGAATACCGGGGGCCTACTTACGAGAATTGAGGGATTGC GAGCTTTCCTTCCAAAGGCTGAGTTAATGAACAGAGTGAACAATTTTAAGGAGTTGAAAGAAAATGTGGGTCGCCAAATATACGTGCTGATTAAACGAAT AAATGAGTCAAATAATGAGTTGATACTCAGTGAAAGGGAAGCTTGGGAAATGATAAACCTCCGAGAGGGAACACTTCTTGAAGGAACCGTTAAGAAACTT TTTCCATACGGAGCCCAAGTAAGAATAGGTGAAACTAACCGTAGTGGGCTGCTGCATGTCTCAAACATAACTAGGACTCGCATTTCATCTGTCAGTGACT TGCTTAAAGTTGACGAAAAGGTTAAAGTCCTTGTTGCAAAGTCAATGTTTCCTGACAAAATATCTCTCAGTATTGCTGACCTTGAAAGTGAGCCTGGTCT GTTCGTATCAAACAAGGAGAAAGTGTTTGCTGAGGCAGAAGAGATGGCAAAGAAGTATCGGCAAAAGCTTCCAGCCAGTTCAACAAATTTGAAGCCAGAA ATCCCACCAAGCAAGAATGCCCTATCTTCTGACACTGAGGCAACATTATATGCAAACTGGAAGTGGTTCAAATTTGAAAAGGAGTGA
AA sequence Show only first row Show all	>Potri.002G063400.1 pacid=42777887 polypeptide=Potri.002G063400.1.p locus=Potri.002G063400 ID=Potri.002G063400.1.v4.1 annot-version=v4.1 MQILLLQPCKSLTLFSYSLPSNTDSLVITHKRSIVHHNKCAKPPCFHSFCSLGTLKAIFLSKNSQLWKSSLVTLCSQNDVFDDFSSTQLPEKERDDRIQV NEELELLNKPSPVIFNNGLDVEADKESEKPGKDEALAPFLKFFKSNDSLDEVSEDERDLGVVEERSGVDNEDKEPRKINVDYYEPKPGDFVVGVVVSGNE NKLDVNIGADLLGTMLTKEVLPLYDKEMEFLLCDTKKDVKEFMVKGKMGIVKDEVAMSPGPPGLGKPVVETGTVLFSEVLGRTLSGRPLLSTRRLFRRLA WQRVRQIKDLNEPIEIKISEWNTGGLLTRIEGLRAFLPKAELMNRVNNFKELKENVGRQIYVLIKRINESNNELILSEREAWEMINLREGTLLEGTVKKL FPYGAQVRIGETNRSGLLHVSNITRTRISSVSDLLKVDEKVKVLVAKSMFPDKISLSIADLESEPGLFVSNKEKVFAEAEEMAKKYRQKLPASSTNLKPE IPPSKNALSSDTEATLYANWKWFKFEKE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	0	1
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	1.00	0.9892
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	2.00	0.9822
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	3.46	0.9769
AT5G63520			unknown protein		Potri.011G010200 [exp]	4.89	0.9738
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	5.74	0.9771
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	6.70	0.9727
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	7.07	0.9753
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.001G211300 [exp]	7.74	0.9724
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	9.16	0.9710
AT5G57960			GTP-binding protein, HflX (.1)		Potri.002G031100 [exp]	9.16	0.9723

Compare expression of checked genes

Potri.002G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.