Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IP5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71710 631 / 0 DNAse I-like superfamily protein (.1.2) AT1G34120 574 / 0 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 395 / 9e-130 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT3G63240 295 / 1e-91 DNAse I-like superfamily protein (.1) AT1G05470 283 / 1e-86 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 280 / 1e-85 CVL1 CVP2 like 1 (.1.2) AT2G37440 254 / 3e-78 DNAse I-like superfamily protein (.1.2) AT5G65090 254 / 2e-77 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 249 / 8e-76 DNAse I-like superfamily protein (.1.2) AT2G01900 241 / 4e-73 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197800 [exp] 964 / 0 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.003G088300 [exp] 424 / 2e-140 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.001G145900 [exp] 423 / 2e-140 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G212700 [exp] 291 / 2e-90 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.002G050000 [exp] 289 / 1e-89 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 288 / 8e-89 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G084300 [exp] 287 / 1e-88 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 265 / 4e-81 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 264 / 5e-81 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028697 [exp] 720 / 0 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 717 / 0 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10040107 [exp] 364 / 1e-114 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 301 / 9e-94 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10011041 [exp] 301 / 1e-93 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 285 / 5e-90 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 286 / 6e-88 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 263 / 1e-83 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 267 / 5e-82 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 266 / 2e-81 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.002G063500.11 pacid=42777163 polypeptide=Potri.002G063500.11.p locus=Potri.002G063500 ID=Potri.002G063500.11.v4.1 annot-version=v4.1 ATGAAGTATTCTAGGACGAAGCAGCAACCAGAGCTATTTTGGCCAAGAGTGGTGGTTCGTAAATTGCTAAATATCAGCTCCAAAGAATGCGATTACAGCG CCGACTCTGACGACGATAACGCTTCTGATTCTGCTTCCGATATCAATGAATTTGATGAATGCTCGAGAGGATCACAATCTGGAAGTAAAAGAGGGGAGGA TGCTCAAGATTCTATTCCAAGGATAAGGAGAAGATTGTCAGAGACATTTAGAGCACAGTACATAAACACAAAGGAAATCAGAATATGCGTTGGGACGTGG AATGTTGGAGGAAAACTTCCAAATGATGACCTAGATATCGATGACTGGATTGATACTGATGATCCTGCTGACATCTACGTGTTTGGGCTTCAGGAGATTG TACCCTTAAACGCTGGGAATATCTTTGGCGCTGAAGACAGCCGTCCAGTTCCTAAGTGGGAAAACATTATTCGTGAAACACTGAACAGAATTCGACCAGC AAGGACTAAGGTTAAATGCTACAGTGATCATCCATCTCCATCAAAATTTATGTCATCTGAAAATGTGCCCACTATAGCAGAAGAGATATTACTTGAAAGC GATAGTGATATTGGTGAAGAAATCCATTCCTTCCATGAAGAATCCAATGGTTTTGATGAACTCAATGATAAATCAATTACAGGTGACATGAACTCAAATT CTGGAGTTCCAGACAATCAAATTCTGGATTTACAGAAGCAATTTTCTTCTCCAAAAAAACTAGATGGATTAAATTGCTTGCGGACCGAAGATTCTGCAGG AGATGTACAAGCATCTGCAGCTCCTCAAAAATTAACTAGAATTCTTAGTAGTTCTGAATGGATTGGCTTGAGTTGGCCAGAGCCCCCTTTAAACTTGCTA TCTCAGCATGTTTTGCAGAGACCAACTTCCTTCAAATCAATTAAATCATTTAAAGCAACCAAATCTTTTGGAGGATATAGTTCTTTAAAGTCTGTTTCAA GTGAATTACAATCAAGATTGGCTTTGTTTGCCGAGCTTGACTTTGAATCTCTCATGAAACGGAATAGAAGATCATCATATGTAAGGATAGTGAGCAAGCA GATGGTCGGAATCTTCCTCACTATTTGGATTCGTAGGAGCTTGCGTAAGCATATTCATAACTTAAAAGTGTCCACGGTTGGTGTTGGTGTTATGGGCTAT ATTGGTAACAAGGGATCAATATCAGTCAGCATGTCTATATATCAGACATTTTTCTGTTTTGTATGCACACACCTCACGTCAGGTGACAAGGATGGAGATG AACTCAAAAGAAATACCGATGTTCATGAAATACAAAGGAGGACTAAATTTCATCCCTTTTCCTGTGTTGGACTTCCTAAAGGCATCTATGATCATGAACG AATTATCTGGTTAGGTGATTTGAATTACCGCATCAACTTGTCATACGACCAAACATGTGAACTCATCTCCAAAAAGGAGTGGTCCAAGTTAGTGGAAGGG GACCAGCTTGTACGAGAATTAAGAAAAGGCTGTGCATTCGATGGATGGTCAGAGGGTATATTGGATTTTGCACCAACATATAAATATGAGATGAATTCTG AGAAATACTGCGGAGAAGATCCAAAGGCTGGAAGGCGTATTCCTTCATGGTGTGATCGCATCCTTTCATATGGAAAGGGAATGAGGCTACTGAACTACAG GAGGAAAGAGCTAAAACTTTCTGATCACCGGCCTGTGGCTGCCACATATATGGCTGAGGTTGAGGTGTTTTCTCCTAGGAAGCTACAGAAGGCGCTCACA TTCACAGATGCAGAGATTGAAAATGAGGAAGTTGTGGCAGGCTTGGGAATTGATGTTAGAATAAGCCAGTTGAGATTGGAGCAGGCAAATCCAGAAAGCG TTTTAGATTACACGAGTCACCGGGGCAGGTTTTGGACAACTATTGGAAGTTAG
AA sequence Show only first row Show all	>Potri.002G063500.11 pacid=42777163 polypeptide=Potri.002G063500.11.p locus=Potri.002G063500 ID=Potri.002G063500.11.v4.1 annot-version=v4.1 MKYSRTKQQPELFWPRVVVRKLLNISSKECDYSADSDDDNASDSASDINEFDECSRGSQSGSKRGEDAQDSIPRIRRRLSETFRAQYINTKEIRICVGTW NVGGKLPNDDLDIDDWIDTDDPADIYVFGLQEIVPLNAGNIFGAEDSRPVPKWENIIRETLNRIRPARTKVKCYSDHPSPSKFMSSENVPTIAEEILLES DSDIGEEIHSFHEESNGFDELNDKSITGDMNSNSGVPDNQILDLQKQFSSPKKLDGLNCLRTEDSAGDVQASAAPQKLTRILSSSEWIGLSWPEPPLNLL SQHVLQRPTSFKSIKSFKATKSFGGYSSLKSVSSELQSRLALFAELDFESLMKRNRRSSYVRIVSKQMVGIFLTIWIRRSLRKHIHNLKVSTVGVGVMGY IGNKGSISVSMSIYQTFFCFVCTHLTSGDKDGDELKRNTDVHEIQRRTKFHPFSCVGLPKGIYDHERIIWLGDLNYRINLSYDQTCELISKKEWSKLVEG DQLVRELRKGCAFDGWSEGILDFAPTYKYEMNSEKYCGEDPKAGRRIPSWCDRILSYGKGMRLLNYRRKELKLSDHRPVAATYMAEVEVFSPRKLQKALT FTDAEIENEEVVAGLGIDVRISQLRLEQANPESVLDYTSHRGRFWTTIGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71710			DNAse I-like superfamily prote...		Potri.002G063500 [exp]	0	1	Pt-IP5.2
AT5G24060			Pentatricopeptide repeat (PPR)...		Potri.004G072400 [exp]	5.74	0.8715
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.015G093600 [exp]	6.92	0.8936
					Potri.011G146000 [exp]	10.19	0.8798
AT2G16250			Leucine-rich repeat protein ki...		Potri.002G260100 [exp]	11.40	0.8852
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.016G065900 [exp]	19.39	0.8854
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	19.84	0.8897
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.001G097300 [exp]	28.03	0.8850
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	30.00	0.8381	CNX2.1
					Potri.016G003750 [exp]	37.94	0.8581
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	39.64	0.8699	PE6.1

Compare expression of checked genes

Potri.002G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.