Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09760 481 / 1e-171 Protein kinase superfamily protein (.1.2.3) AT1G71697 478 / 3e-170 ATCK1 choline kinase 1 (.1) AT1G74320 464 / 6e-165 Protein kinase superfamily protein (.1) AT2G26830 176 / 8e-52 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197500 [exp] 649 / 0 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.001G032000 [exp] 496 / 3e-177 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.003G193000 [exp] 493 / 3e-176 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.006G120700 [exp] 168 / 9e-49 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028728 [exp] 523 / 0 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10028696 [exp] 518 / 0 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10024127 [exp] 462 / 4e-162 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10026145 [exp] 452 / 4e-157 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10005386 [exp] 409 / 7e-142 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10019424 [exp] 158 / 7e-43 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF01636 [poplar] [flax] APH Phosphotransferase enzyme family
Representative CDS sequence Show only first row Show all	>Potri.002G063700.1 pacid=42777008 polypeptide=Potri.002G063700.1.p locus=Potri.002G063700 ID=Potri.002G063700.1.v4.1 annot-version=v4.1 ATGGTGATGAAAACAAATGGATTCATCGAAGGAGGTTTCCCAGATGAGCTAAAGAGAGTCCTTCGATCAGTAGGATCTGAGTGGGGAGATGTAGTAGATG ACATGGAAGCATTGCAGGTGGTGCCTTTGAAGGGGGCTATGACTAATGAGGTTTTCCGGATCATCTGGCCTACAAAGTGTGGTAATCTTAATCGAAATAT ATTGGTTCGGATTTATGGTGAAGGCGTTGAAGCTTTTTTCAACAGGGATAATGAGATTAGGACTTTTGAGTGCATGTCGAAGCATGGACAAGGCCCTAGG CTTCTTGGCCGGTTTGCTGATGGAAGGGTTGAAGAGTTTATTCATGCTAGAACACTATCAGCTGCTGATCTTCGTGACCATGAAATATCTGCTCTGGTGG CTGCAAAGATGAGAGAGTTCCACGATCTTGAGATGCCTGGTCCTAGGACTATACTCCTCTGGAACAGGATGAGGGGCTGGCTGGTTCAGGCTAAAAGCAT GTGCTCAGCCAAAGATGTGAAAGAATTTTGCTTGGATAGTCTAGAAAATGAGATCAATATGCTAGAGAAGGAGCTGTCGCATGACTATCTAGATATTGGG TTTTGTCACAATGACTTGCAGTATGGTAACATAATGCTTGACGAAGAGACAAGATCAATCACCTTAATAGATTATGAGTATGCAAGTTTCAATCCTGTTG CATATGACATTGCAAATCACTTCTGCGAAATGGTAGCAAATTATCATTCCGCGACGCCACATATTTTGGACTACAGTAAATACCCAGAATTAGAGGAGCG CCACAGATTTGTCCAGGCGTATCTATGTTCTGCAGGGAAGCAACCCAGTGAAGATGAAGCGGAGTTACTACTTCAAGAAGTGGAAAAGTACACTCTGGCA AGCCATGTCTTTTGGGGATTATGGGGAATAATCTCGGGCTATGTTAACAAGATAGAGTTCGACTATATGGAGTATGCTAGGCAGAGGTTTCAGCAGTATT GGATGAGAAAGCAAGAGCTCTTGGCATCCTCTGATAAAGCCCCTGATAACCATGTAGATGGATATGTAGTGTACGATAGATGA
AA sequence Show only first row Show all	>Potri.002G063700.1 pacid=42777008 polypeptide=Potri.002G063700.1.p locus=Potri.002G063700 ID=Potri.002G063700.1.v4.1 annot-version=v4.1 MVMKTNGFIEGGFPDELKRVLRSVGSEWGDVVDDMEALQVVPLKGAMTNEVFRIIWPTKCGNLNRNILVRIYGEGVEAFFNRDNEIRTFECMSKHGQGPR LLGRFADGRVEEFIHARTLSAADLRDHEISALVAAKMREFHDLEMPGPRTILLWNRMRGWLVQAKSMCSAKDVKEFCLDSLENEINMLEKELSHDYLDIG FCHNDLQYGNIMLDEETRSITLIDYEYASFNPVAYDIANHFCEMVANYHSATPHILDYSKYPELEERHRFVQAYLCSAGKQPSEDEAELLLQEVEKYTLA SHVFWGLWGIISGYVNKIEFDYMEYARQRFQQYWMRKQELLASSDKAPDNHVDGYVVYDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.013G040700 [exp]	3.00	0.7964	BZO2.2
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	3.00	0.8227
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.011G022800 [exp]	4.00	0.8140
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	6.40	0.7302
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	7.07	0.7800	Pt-FRD3.1
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.005G185600 [exp]	10.77	0.7902	Pt-ACR3.2
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	11.22	0.7526
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Potri.018G132000 [exp]	11.40	0.7636
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	12.48	0.7303
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	15.29	0.7570

Compare expression of checked genes

Potri.002G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.