Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 439 / 8e-152 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G23320 266 / 3e-85 TAR1 tryptophan aminotransferase related 1 (.1) AT1G70560 242 / 1e-75 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT4G24670 243 / 2e-75 TAR2 tryptophan aminotransferase related 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G064000 [exp] 498 / 4e-175 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.008G187800 [exp] 257 / 2e-81 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.012G083300 [exp] 255 / 5e-80 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 253 / 3e-79 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.010G044500 [exp] 251 / 3e-79 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028695 [exp] 442 / 1e-152 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 429 / 1e-147 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006199 [exp] 244 / 8e-77 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10036846 [exp] 244 / 2e-76 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10039944 [exp] 232 / 1e-71 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 212 / 1e-64 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 186 / 1e-51 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042084 [exp] 119 / 6e-31 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF04863 [poplar] [flax] EGF_alliinase Alliinase EGF-like domain CL0061 [poplar] [flax] PLP_aminotran PF04864 [poplar] [flax] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Potri.002G063800.1 pacid=42779791 polypeptide=Potri.002G063800.1.p locus=Potri.002G063800 ID=Potri.002G063800.1.v4.1 annot-version=v4.1 ATGACTAAGGTTCGAAGCATTACTTATACGTTCTTCCTAATTTGTTCAATAACACTTAATGTCTTAATGATCAATTTGTATTTTGGTGGTGGATGGGAGC AAAGATGGACAAAGTTGGCGGCAGAAGAAGCCGAAAATGTTGCATCTATTTCTTGCTCAGGCCACGGAAGGGCATTCTTAGATAGTTTAGGTGCTGGTAT TGGCAAGCCCATTTGTGAATGTAATGCTTGCTTTAAAGGCCCTGATTGCGCAGAGTTTGTTCCTGATTGTGTGGTGGATGCAGACAGTGGAGATCCCATG TTCTTGGAGCCCTTCTGGCTGAAGCATGCAGCTAGCAGTGCTGTTGTGGTTCCAGGATGGCATCGTATGAGCTACGAATTCAGTGATTGTTCTCTCATCT CAAAAGAACTCAAGATGCACATCCGAAAACTTCATGCTACTGTAGGAAATGCTAACACAGATGGAAGATACATTATTTTTGGTGCTGGGGCTACCCAACT TCTTAATGCAGCTGTGCATTCTCTTTCCTCTCATGATGATCCATCTTCCCCTTCAAGGATTGTAGCTTCAGTCCCGTACTACCCGGTTTATAGAGAGCAA ACACAGTTCTTCGAATCTAATAATTACAAGTTTAGTGGAGAAACTTCAAAGTGGAAAGACAATATGGATTCCTTGAGCAATTATATTGAGTTTGTGACTT CACCAAACAATCCTGATGGTCAATTAAAGAAAGCAGTTCTTCAAGGACCATCAGTAAAGACAATTCATGATCTTGCCTACTTTTGGCCTCATTTTACACC AATCCCAGCTCCAGCTGATGAAGACCTCATGGTATTTACAATCTCTAAGCTCACCGGCCATGCTGGCAGTAGATTCGGGTGGGCACTGATAAAGAATGAG GCCGTGTACCAAAGAATGCTAGCATATATGAGTCTAAGTACACATGGGGTCCCTCGAGAAACTCAATTACGAGTTTTGAAGCTTCTAAAAGTAGTCCTTG AAGAAAAAGGAAGGGAAATGTTCGAGTTCGGATATGAAGCAATGAGGAATCGGTGGAAAAAACTGAGCAAAATCTTATCGATTTCAAAACGATTTTCTCT CCAAGATCTTGAGCATCAAAATTGTTCCTTTTCCAAAATATTCCGGGCGCCTTCTCCAGCATTTGCATGGCTGAAGTGCGAAAAGGAAGAAGATAAAAAC TGTTTTGAAGTCCTCAAAACATCAAATATCATTGGCCGCGAAGGTAGCTTGTTTGGCGCGGAAAGCCGTTTCGTGCGTCTAAGCCTTGTCCAGAGCCAAG ATGATTTCGATTTATTACTTCAACGAATGGAAACTTTAGTAGTGCTTGAAGAAAAATAA
AA sequence Show only first row Show all	>Potri.002G063800.1 pacid=42779791 polypeptide=Potri.002G063800.1.p locus=Potri.002G063800 ID=Potri.002G063800.1.v4.1 annot-version=v4.1 MTKVRSITYTFFLICSITLNVLMINLYFGGGWEQRWTKLAAEEAENVASISCSGHGRAFLDSLGAGIGKPICECNACFKGPDCAEFVPDCVVDADSGDPM FLEPFWLKHAASSAVVVPGWHRMSYEFSDCSLISKELKMHIRKLHATVGNANTDGRYIIFGAGATQLLNAAVHSLSSHDDPSSPSRIVASVPYYPVYREQ TQFFESNNYKFSGETSKWKDNMDSLSNYIEFVTSPNNPDGQLKKAVLQGPSVKTIHDLAYFWPHFTPIPAPADEDLMVFTISKLTGHAGSRFGWALIKNE AVYQRMLAYMSLSTHGVPRETQLRVLKLLKVVLEEKGREMFEFGYEAMRNRWKKLSKILSISKRFSLQDLEHQNCSFSKIFRAPSPAFAWLKCEKEEDKN CFEVLKTSNIIGREGSLFGAESRFVRLSLVQSQDDFDLLLQRMETLVVLEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G063800 [exp]	0	1
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.003G211100 [exp]	4.24	0.9135
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.006G058100 [exp]	12.36	0.8780	Pt-CYP712.3
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	12.88	0.8831	CYP712.2
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227200 [exp]	16.85	0.8722
AT5G60520			Late embryogenesis abundant (L...		Potri.009G012600 [exp]	20.49	0.8691
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.001G294300 [exp]	21.00	0.7978
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.012G092200 [exp]	25.51	0.8513
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.004G136900 [exp]	25.69	0.8476
AT1G71695			Peroxidase superfamily protein...		Potri.002G065300 [exp]	26.83	0.8401
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.001G015100 [exp]	28.80	0.8478	Pt-L1.1

Compare expression of checked genes

Potri.002G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.