Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34065 82 / 4e-20 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G39460 80 / 2e-19 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G42130 45 / 1e-06 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) AT4G03115 37 / 0.0004 Mitochondrial substrate carrier family protein (.1) AT3G20240 37 / 0.0005 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197200 [exp] 89 / 8e-23 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G085900 [exp] 85 / 4e-21 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G189600 [exp] 45 / 1e-06 AT5G42130 542 / 0.0 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 36 / 0.001 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005787 [exp] 82 / 4e-20 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 82 / 6e-20 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10029770 [exp] 44 / 2e-06 AT5G42130 478 / 5e-169 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1) Lus10042796 [exp] 39 / 9e-05 AT5G42130 260 / 1e-85 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.002G063901.1 pacid=42779172 polypeptide=Potri.002G063901.1.p locus=Potri.002G063901 ID=Potri.002G063901.1.v4.1 annot-version=v4.1 ATGGAGAGAATCTTTACACTCAATCTACTGTATAGAGCCTCTCTTTGTTATTTTAATAGATTACTAGACTTCATTCAGACTACGGGTGCCTTAGGGGGTG CTGCTTCTTCTCTTATTCATGTGCCAGCAGAGGTTGTTAAGAAAAGGATGCAAACCGGGCAATTTGCTTCAGCCCCTGATGCTGTTCATCTTATTGTCAC TAAGGAGGGTTTTAAAGGTCTCTACGCGGGTGCAACACTTCAGATCTTAAGATTTTGA
AA sequence Show only first row Show all	>Potri.002G063901.1 pacid=42779172 polypeptide=Potri.002G063901.1.p locus=Potri.002G063901 ID=Potri.002G063901.1.v4.1 annot-version=v4.1 MERIFTLNLLYRASLCYFNRLLDFIQTTGALGGAASSLIHVPAEVVKKRMQTGQFASAPDAVHLIVTKEGFKGLYAGATLQILRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34065		SAMC2	S-adenosylmethionine carrier 2...		Potri.002G063901 [exp]	0	1
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	3.46	0.7029
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	4.58	0.6680
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	5.74	0.7423
AT4G16447			unknown protein		Potri.011G086300 [exp]	6.92	0.7182
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G026950 [exp]	13.00	0.5899
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	13.03	0.5663
AT5G12180		CPK17	calcium-dependent protein kina...		Potri.001G274700 [exp]	13.26	0.6112
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	13.85	0.5949
					Potri.013G104501 [exp]	20.00	0.5615
AT2G29620			unknown protein		Potri.009G043000 [exp]	31.74	0.5553

Compare expression of checked genes

Potri.002G063901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.