Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATMEPCT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34060 515 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34040 492 / 1e-172 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G23320 267 / 1e-85 TAR1 tryptophan aminotransferase related 1 (.1) AT4G24670 266 / 1e-84 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G70560 261 / 3e-83 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G063800 [exp] 552 / 0 AT1G34060 472 / 1e-164 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.008G187800 [exp] 279 / 8e-90 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.010G044500 [exp] 273 / 7e-88 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.012G083300 [exp] 263 / 7e-83 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.T125108 [exp] 260 / 5e-82 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028695 [exp] 498 / 1e-174 AT1G34060 474 / 4e-165 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10007085 [exp] 482 / 3e-168 AT1G34060 456 / 5e-158 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039944 [exp] 253 / 2e-79 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10006199 [exp] 250 / 5e-79 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10036846 [exp] 250 / 9e-79 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10027678 [exp] 238 / 1e-74 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10018088 [exp] 198 / 7e-56 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042084 [exp] 124 / 2e-32 AT4G24670 190 / 5e-60 tryptophan aminotransferase related 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0001 [poplar] [flax] EGF PF04863 [poplar] [flax] EGF_alliinase Alliinase EGF-like domain CL0061 [poplar] [flax] PLP_aminotran PF04864 [poplar] [flax] Alliinase_C Allinase
Representative CDS sequence Show only first row Show all	>Potri.002G064000.1 pacid=42777766 polypeptide=Potri.002G064000.1.p locus=Potri.002G064000 ID=Potri.002G064000.1.v4.1 annot-version=v4.1 ATGATCAAGACCCGGAGCTTAAAACATGTGCTGTGTTTGGTTTGTTCGATAATTCTCAATATCTTCTTTCTTTTTAAAGTGGGTGGTGAGTGGAATCTGA GTTGGAGCAAAACGGCAGCGACCGAAGCTGAGGCTGTGGCAGCAATACCATGCTCGGGACATGGAAGAGCCTACTTGGATGGTTTGGTTCTTGATGGAAA TAAAGGACCAGTTTGTGAGTGCAACACTTGCTATGGAGGCCCTGACTGTTCTCAGTTCTTCCCTGACTGTTCTGCAAACGCTAACGGTGGGGATCCTTTA TTCTTGGAGCCCTTCTGGATGCAGCATGCAGCCAGCAGCGCACTTCTAGTAGCAGGGTGGCACCGGATGAGCTACTCGTATGATGATCAGTCTACCATCT CTAAAGAGCTCGAGAGACACATCCGCAAACTACATGATATTGTAGGAAATGCAGCCACGGAAGGAAGATATGTTGTATTTGGTGCCGGCTCAACCCAACT CCTTAGTGCTGCGGTTTATGCTTTATCTCCAGATAACTCCTCGTCGCCTGCCAGGGTGGTGGCTTCAATCCCTTTTTATCCGGTTTATGAAATGCAAACG GACTTTTTTCAATCAGTAGATTTCCATTTTCAAGGGGATACATCCTTTTGGAAGAACAATTCAGACACCGATACAGAAATAATCGAGTTTGTAACTTCAC CAAACAATCCTGATGGGCAGCTGAATACGGCTGTCCTCCATGGCCCAAATGTCAAAGAAATCTATGACCATGCGTATTATTGGCCACATTTTACAGCAAT TCCAGCTCCGGCAGATGGTGATGTGATGATATTCACTCTTTCTAAGCTTACTGGTCATGCTGGATCTAGATTCGGGTGGGCAATCATCAAGGACAAGGAC ATCTACCAGAGAATGTTAACCTACCTAACCTTAAATACCCTGGGAGTTTCTAAGGATAGTCAGTTAAGAGCTTTAAAACTTCTAAAAGTAGTTCTTGCAA CGGGAGGAAGGGAGATATTTGAATTTGGACACGAGACAATGAGGAAACGCTGGGAAAAATTGAACAAGGTCATTTCAACGTCTAAACGCTTCTCTCTGCA AAAAATCACGCCCAAGTACTGCACCTACTTCCAGCAAATCAGGGGAGCTTCACCAGCTTACGGGTGGTTGAAGTGTGAGAATCAAGAAGATAAACACTGT TATGCAGTCCTGCAAGCAGATGCCAATATCACTGGCCGTCAAGGCAGTATTTTCTTCGCAGAAGATCGTTATGTGCGCCTGAGCCTCATCAGAAGCCAAG ATGATTTCGATTTACTGCTCGACAAATTAAACGGGGTAGTCGCAGGAGAGGAAGGTGCTAGAACCATGTGA
AA sequence Show only first row Show all	>Potri.002G064000.1 pacid=42777766 polypeptide=Potri.002G064000.1.p locus=Potri.002G064000 ID=Potri.002G064000.1.v4.1 annot-version=v4.1 MIKTRSLKHVLCLVCSIILNIFFLFKVGGEWNLSWSKTAATEAEAVAAIPCSGHGRAYLDGLVLDGNKGPVCECNTCYGGPDCSQFFPDCSANANGGDPL FLEPFWMQHAASSALLVAGWHRMSYSYDDQSTISKELERHIRKLHDIVGNAATEGRYVVFGAGSTQLLSAAVYALSPDNSSSPARVVASIPFYPVYEMQT DFFQSVDFHFQGDTSFWKNNSDTDTEIIEFVTSPNNPDGQLNTAVLHGPNVKEIYDHAYYWPHFTAIPAPADGDVMIFTLSKLTGHAGSRFGWAIIKDKD IYQRMLTYLTLNTLGVSKDSQLRALKLLKVVLATGGREIFEFGHETMRKRWEKLNKVISTSKRFSLQKITPKYCTYFQQIRGASPAYGWLKCENQEDKHC YAVLQADANITGRQGSIFFAEDRYVRLSLIRSQDDFDLLLDKLNGVVAGEEGARTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G064000 [exp]	0	1	ATMEPCT.1
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	1.41	0.8998
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099400 [exp]	4.00	0.8874
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101500 [exp]	6.70	0.8758
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.005G234000 [exp]	9.48	0.8595	Pt-VFCYSPRO.2
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099800 [exp]	9.89	0.8416
AT4G34950			Major facilitator superfamily ...		Potri.009G132700 [exp]	10.09	0.8376
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.016G038900 [exp]	12.12	0.8814
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021200 [exp]	12.24	0.8551
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G014100 [exp]	14.83	0.8293
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101401 [exp]	18.16	0.8183

Compare expression of checked genes

Potri.002G064000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.