Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GI.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22770 1626 / 0 FB, GI gigantea protein (GI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196700 [exp] 1968 / 0 AT1G22770 1609 / 0.0 gigantea protein (GI) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028693 [exp] 1554 / 0 AT1G22770 1562 / 0.0 gigantea protein (GI) (.1) Lus10028731 [exp] 1509 / 0 AT1G22770 1446 / 0.0 gigantea protein (GI) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G064400.2 pacid=42777210 polypeptide=Potri.002G064400.2.p locus=Potri.002G064400 ID=Potri.002G064400.2.v4.1 annot-version=v4.1 ATGGCTAGTTCTTCTTCTGAGAGGTGGATTGATGGTCTTCAATTCTCTTCATTGTTTTGTCCCCCTCCTCAAGATGCCCAGCAAAGAAAGGCACAAATTA CTGCTTATGTGGAGTACTTTGGGCAGTGCACATCGGAACAGTTTCCCGATGACATTGCCGAGGTATACCTACTCTTTGAGTCGGTCTTTCTTGTTTGCAT GCTGATCCGCAATCGTTATCCATCAAAAGACAAACACCTATTTGATGATGTTTTGGCCATGTTTGTCCTTCATCATCCGGAGCATGGACATGCTGTTGTT CTTCCAATTATTTCATGTATTATAGATGGTACACTAGTTTATGATGGGAGCAGCCCTCCATTTGCTTCTTTCATTTCCCTAGTCTGCCCTAGCAGCGAGA ATGAATATTCTGAACAATGGGCTCTGGCGTGTGGAGAGATTTTGCGGATTTTAACTCATTACAATCGCCCAATTTACAAGCTGGAAAAACAGAATAGTGA AACAGACAGAAGCAGCAGTGATGGCAATTCTACAAGTATTGAATCAGAAGGGAAATCCTCCACCATACCTCTGGTACAACAAGAGAGGAAACCTTTCAGG CCCCTGTCTCCCTGGATCACTGACATATTGCTTGCTGCACCTCTGGGTATCAGAAGTGACTACTTTCGTTGGTGCAGTGGTGTTATGGGTAAATATGCTG CTGGAGAGCTCAAGCCACCAACAACCACTTCTTCTCGCGGGTCAGGAAAGCATCCTCAGCTGGTGCCATCAACTCCAAGGTGGGCTGTGGCAAATGGTGC TGGGGTTATATTAAGTGTGTGCGATGAGGAAGTTGCTCGTTATGAGACTGCTACATTAACTGCGGTAGCTGTTCCTGCACTTCTACTCCCTCCTCCAACA ACAGCTTTGGATGAGCATTTAGTTGCTGGGTTACCTGCTCTTGAGCCATATGCATGTTTATTTCACCGGTATTACGCCATTGCAACTCCAAGTGCCACTC AACGACTTCTTCTTGGACTTCTTGAAGCACCGCCATCATGGGCTCCCGACGCTCTTGATGCTGCTGTACAACTTGTGGAACTCCTTCGAGCTGCTGAAGA TCATGCATCTGGCATAAGGCTTCCCCGGAATTGGATGCACTTGCATTTCTTGCGTGCAATAGGGACTGCAATGTCCATGAGAGCAGGTATAGCAGCTGAT GCTGCTGCAGCTTTACTTTTCCGCATCCTCTCGCAGCCTGCATTGCTTTTTCCGCCACTAAGGCAAGTGGAAGGGGTGGAAGTTCAACATGAACCTTTGG TTGGTTATCTTTCAAGCTACAGGAAGCAGATAGAAGTGCCTGCAGCTGAAGCGACTATTGAAGCAACTGCCCAGGGAATTGCATCAATGCTATGTGCCCA TGGACCTGAGGTTGAATGGAGAATTTGTACCATTTGGGAAGCTGCTTACGGTCTGATTCCTTTAAGTTCCTCAGCAGTTGATCTTCCTGAAATCATAGTT GCAACACCATTGCAACCTCCAATATTGTCATGGAATCTGTATATACCTCTCCTTAAGGTCCTGGAATATCTTCCTCGTGGAAGTCCTTCTGAAGCATGCC TAATGAAGATATTTGTTGCCACAGTGGAAGCAATTCTTCAGAGAACATTTCCACCAGAGTCTTCTAGAGCACAGACCCGAAAAACAAGATATCTTTCTAG CTTATGGCCTGCCTCCAAAAACCTTGCTGTGGCAGAGCTTCGTACAATGGTCCACTCTCTCTTTCTAGAATCATGTGCCTCTGTAGAGCTTGCATCAAGG CTACTATTTGTTGTGTTAACTGTGTGTGCCAGCCATGAAGCTCGTTCCAATGGCAGCAAGAGACCAAGAGGTGAAGAAAACAATCCTCCTGATGATGGCA CAGAGGACTCACAATCGACATCTGAAACGCCAAGAAACATCAAATCTAGAAGGACGAAGAAACAAGGTCCAGTTGCAGCATTTGATTCTTATGTTCTGGC TGCTGTATGTGCTCTGGCTTGTGAGCTTCAAATGTTCCCCTTTGTTTCCAGGGGGAGTAATCATTCAACTTCTAAGCATGCACAGACTGTAGCCAAGCCT GCAAAACTAAATGGATCTGTTAGTGAGTTCCAAACTAGTCTCGACTCTGCAAGCCATCATACTCACAGAATTTTAGCTATTTTGGAGGCACTTTTTTCTC TGAAACCATCTTCTATTGGAACATCTTGGAGTTATAGTTCAACTGAGATAGTAGCTGCAGCTATGGTTGCTGCTCATGTTTCTGAACTATTTAGACGTTC AAAGGCTTGCATGCATGCGCTCTCTGTTCTGATGCGATGCAAGTGGGATAATGAAATTTACACTAGGGCATCCTCACTATATAACCTCATTGATATTCAC AGTAAGGCTGTTGCATCCATAGTTAACAAGGCTGAGCCATTAGGAGCACACTTGCATACACCAGTTTGGAAAGATTCTCTTATGTGTTTTGATGGTAACA AGCAAAATAGAAGTGCAAGCACAGTCTGCTTTAATTCAGGGCAATCATCTGTCCTTCAATACGAAGAATTAGTTCATTCAGAAACTAAACTTAAATGTGA GAGAGCATCACATTCAGAAGAAGGCTCTGGAAGCACCTCGGGGAAAGGTATTGCGGGATTCCCCTTTGATGCTTCAGATTTGGCCAATTTCTTAACAATG GACAGGCATATTGGATTTAATTGCAGTGCACAAGTTCTATTAAGATCAGTGCTTCCAGAGAAGCAAGAGTTATGTTTCTCTGTTGTTTCTCTGTTGTGGC ACAAGCTAATTGCATCACCTGAAACTCAACCTTGTGCAGAAAGCACTTCTGCTCAACAAGGATGGAGACAGGTTGTGGACGCACTATGCAATGTTGTATC AGCATCGCCAGCAAAAGCAGCTACAGCAGTTGTTCTTCAGGCGGAGAGGGAATTGCAACCTTGGATTGCCAAAGATGATGATGATTTAGGTCAGAAGATG TGGAGAGTCAATCAGCGCATCGTCAAGTTGATTGTTGAGCTGATGAGAAATCATGATACCTCAGAATCTTTGGTAATTTTGGCTAGTTCATCAGATCTAC TTTTACGTGCCACAGATGGGATGCTTGTTGATGGAGAAGCATGCACTTTACCACAGCTTGAGCTACTGGAAGCAACAGCTAGAGCAGTTCAGCCAGTGCT GGAGTGGGGAGAGTCTGGACTTGCGGTTGCAGATGGCCTTTCAAACATCTTAAAGTGTCGTCTACCAGCTACTATCCGATGCCTTTCTCATCCAAGCGCT CATGTCCGTGCTCTGAGCACATCTGTTCTTCGTGATATTCTTCAAACTGGCTCAATAAAACCCTCTTCCAAGCAAGGGGACAGGAATGGAATCCATGGAC CCTCTTATCAATATTTCAGCCTGGATAAAATCGACTGGCAAGCTGATATTGAAAAGTGCTTAACCTGGGAAGCTCGTAGCCGACTTGCCACAGGAATGCC CATTCATCATCTTGACACTGCTGCCAAGGAGTTAGGCTGTACTATTTCCATTTGA
AA sequence Show only first row Show all	>Potri.002G064400.2 pacid=42777210 polypeptide=Potri.002G064400.2.p locus=Potri.002G064400 ID=Potri.002G064400.2.v4.1 annot-version=v4.1 MASSSSERWIDGLQFSSLFCPPPQDAQQRKAQITAYVEYFGQCTSEQFPDDIAEVYLLFESVFLVCMLIRNRYPSKDKHLFDDVLAMFVLHHPEHGHAVV LPIISCIIDGTLVYDGSSPPFASFISLVCPSSENEYSEQWALACGEILRILTHYNRPIYKLEKQNSETDRSSSDGNSTSIESEGKSSTIPLVQQERKPFR PLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTTTSSRGSGKHPQLVPSTPRWAVANGAGVILSVCDEEVARYETATLTAVAVPALLLPPPT TALDEHLVAGLPALEPYACLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDHASGIRLPRNWMHLHFLRAIGTAMSMRAGIAAD AAAALLFRILSQPALLFPPLRQVEGVEVQHEPLVGYLSSYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIV ATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRTFPPESSRAQTRKTRYLSSLWPASKNLAVAELRTMVHSLFLESCASVELASR LLFVVLTVCASHEARSNGSKRPRGEENNPPDDGTEDSQSTSETPRNIKSRRTKKQGPVAAFDSYVLAAVCALACELQMFPFVSRGSNHSTSKHAQTVAKP AKLNGSVSEFQTSLDSASHHTHRILAILEALFSLKPSSIGTSWSYSSTEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYTRASSLYNLIDIH SKAVASIVNKAEPLGAHLHTPVWKDSLMCFDGNKQNRSASTVCFNSGQSSVLQYEELVHSETKLKCERASHSEEGSGSTSGKGIAGFPFDASDLANFLTM DRHIGFNCSAQVLLRSVLPEKQELCFSVVSLLWHKLIASPETQPCAESTSAQQGWRQVVDALCNVVSASPAKAATAVVLQAERELQPWIAKDDDDLGQKM WRVNQRIVKLIVELMRNHDTSESLVILASSSDLLLRATDGMLVDGEACTLPQLELLEATARAVQPVLEWGESGLAVADGLSNILKCRLPATIRCLSHPSA HVRALSTSVLRDILQTGSIKPSSKQGDRNGIHGPSYQYFSLDKIDWQADIEKCLTWEARSRLATGMPIHHLDTAAKELGCTISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.002G064400 [exp]	0	1	Pt-GI.2
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	3.00	0.8371	GI.1
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	4.47	0.8365
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G230000 [exp]	11.61	0.7937
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	13.96	0.8154
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Potri.014G147900 [exp]	22.27	0.7964
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	28.24	0.7052	Pt-ACA8.6
AT4G03020			transducin family protein / WD...		Potri.014G136000 [exp]	32.17	0.7801
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	36.49	0.7483	ABF1.1
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.006G115100 [exp]	38.72	0.8023
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.004G207100 [exp]	42.98	0.7354

Compare expression of checked genes

Potri.002G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.