Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09830 231 / 1e-77 Uncharacterised conserved protein UCP009193 (.1) AT5G64780 150 / 5e-46 Uncharacterised conserved protein UCP009193 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196400 [exp] 388 / 1e-139 AT4G09830 220 / 2e-73 Uncharacterised conserved protein UCP009193 (.1) Potri.001G003400 [exp] 95 / 6e-25 AT4G09830 99 / 1e-26 Uncharacterised conserved protein UCP009193 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028692 [exp] 258 / 3e-88 AT4G09830 207 / 3e-68 Uncharacterised conserved protein UCP009193 (.1) Lus10028732 [exp] 257 / 7e-88 AT4G09830 203 / 6e-67 Uncharacterised conserved protein UCP009193 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G064800.1 pacid=42777384 polypeptide=Potri.002G064800.1.p locus=Potri.002G064800 ID=Potri.002G064800.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGAGAAAATCCATAGCAACAAGCCTGGAGGAGGTGGATCGGACCATGTACGCTTCGTTTTGCAGTGCTGCAAACTCTCTGTCTCAGCTTT ACACACAGTCTATGAACCACCAAAAACTCTCTTTCCAAGCCGGTGAACGTCATGGTCTTGAAAAACTTTATCAATGGATTTGGAGACAACAAGAGGGAGG ATCTAGGGTGACAACATTTGATATAATCAATTACTTACAGAATGAATTGGACTATTGTGGAGAAGAACCATCAATGTCTCCTAGAACGCCACACCAACAT CAGAATTCCCAACCTATTCCATCCACAAATTCCACCTTTCTGGTTTCTTCGGGCTCGTCTGGCCTGCCAGCTACTGGTCAGGGCACCCGCTCTGAACACT GTGATCAACAATCTAAGAATACAGTTTTCTCAAATGCTTTGTCAAGCCCTGTTCGCAGGAGTCTCCAGAACTACCACATTGCTCAGGGAGGCTACTGTCC ACCTGGTGGTTCACTGTCAGGAAATGGAACCCGCGCCAATGAGCCCAACTTTCTTCAGAACCATAACAGGGATCCTAATCTTCCCAGTTCCAATGATTCC TCCATGGACATCTAA
AA sequence Show only first row Show all	>Potri.002G064800.1 pacid=42777384 polypeptide=Potri.002G064800.1.p locus=Potri.002G064800 ID=Potri.002G064800.1.v4.1 annot-version=v4.1 MGKKRKSIATSLEEVDRTMYASFCSAANSLSQLYTQSMNHQKLSFQAGERHGLEKLYQWIWRQQEGGSRVTTFDIINYLQNELDYCGEEPSMSPRTPHQH QNSQPIPSTNSTFLVSSGSSGLPATGQGTRSEHCDQQSKNTVFSNALSSPVRRSLQNYHIAQGGYCPPGGSLSGNGTRANEPNFLQNHNRDPNLPSSNDS SMDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09830			Uncharacterised conserved prot...		Potri.002G064800 [exp]	0	1
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	1.00	0.8065	Pt-UBP3.1
AT1G27000			Protein of unknown function (D...		Potri.010G092700 [exp]	3.16	0.7434
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.012G117800 [exp]	4.24	0.7100	ARA7.1
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Potri.004G101700 [exp]	4.47	0.7181
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	5.19	0.7269	Pt-ACT2.2
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	6.32	0.7197
AT5G02420			unknown protein		Potri.010G231600 [exp]	8.00	0.6952
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	8.06	0.6873
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	10.58	0.6868
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	11.83	0.6893

Compare expression of checked genes

Potri.002G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.