Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22790 188 / 1e-60 unknown protein AT1G34010 126 / 1e-36 unknown protein AT1G55475 54 / 2e-09 unknown protein AT3G13480 50 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196300 [exp] 343 / 6e-122 AT1G22790 183 / 1e-58 unknown protein Potri.008G170700 [exp] 50 / 2e-08 AT2G33390 77 / 8e-20 unknown protein Potri.001G003300 [exp] 51 / 5e-08 AT3G13480 85 / 4e-21 unknown protein Potri.010G067200 [exp] 47 / 4e-07 AT2G33390 76 / 3e-19 unknown protein Potri.003G221800 [exp] 41 / 0.0001 AT3G13480 99 / 6e-27 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028691 [exp] 191 / 1e-61 AT1G22790 189 / 1e-60 unknown protein Lus10028733 [exp] 187 / 4e-60 AT1G22790 192 / 6e-62 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G064900.1 pacid=42780168 polypeptide=Potri.002G064900.1.p locus=Potri.002G064900 ID=Potri.002G064900.1.v4.1 annot-version=v4.1 ATGTTATTGGCAGTGGAAGGAGGAGGTTTCTTCTCATCTTCAGCTTCTGGGTATAGTAAGGGCTTGACCCTTCTTCTCCTGGGTCAGAAGCACGAAGACA AACCCATGAGAGTTACGCCGTGGAATCAGTACCAGTTGGTGGACCAAGAACCTGACTCTGACCTCCAGCTGGCTTCCTTGAAGAACCGGCTTTCCCACGG CTGCGCTTCTTTTATCTGCTTTGGTCGCGCTTCCGCACATGAATCCCCGTCACCTCTCAAAGTAGGCCCTGCCCAACAGCAGGATGTCTTGCCAGATCCT CTCGTTGCTGACAGGGAAAAAGATCTTACTACCGAGCTTGAAGTTGATAATTATGCAAGAAAAATTACTCTTAAGAGTAATCTGAAGAAGGCATCAAAAA GAATTCCAGTTCCTGTTGAGGATGTTAAGCAGAGCGAGCCATTGAATGGCCAAGGTAGTGATATCCCTGGTCATACAGAGAGGAGAAAAGTGCAGTGGAC TGATGTCTGTGGGAGTGAGCTTGCTGAAATCAGGGAATTTGAACCAAGTGAAACAGGTGGATCAGATGATGAATTCGAGAATGGAAATGAAAGAAGTTGT TCGTGCGTGATTATGTGA
AA sequence Show only first row Show all	>Potri.002G064900.1 pacid=42780168 polypeptide=Potri.002G064900.1.p locus=Potri.002G064900 ID=Potri.002G064900.1.v4.1 annot-version=v4.1 MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHEDKPMRVTPWNQYQLVDQEPDSDLQLASLKNRLSHGCASFICFGRASAHESPSPLKVGPAQQQDVLPDP LVADREKDLTTELEVDNYARKITLKSNLKKASKRIPVPVEDVKQSEPLNGQGSDIPGHTERRKVQWTDVCGSELAEIREFEPSETGGSDDEFENGNERSC SCVIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22790			unknown protein		Potri.002G064900 [exp]	0	1
AT2G36880		MAT3	methionine adenosyltransferase...		Potri.006G123200 [exp]	5.47	0.9175	AdoMet6
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	6.78	0.9187
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	10.39	0.9168
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.001G320800 [exp]	10.39	0.9155	PtrFLA14-8,FLA14.8
AT2G47360			unknown protein		Potri.014G119900 [exp]	12.64	0.9165
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.011G096500 [exp]	14.73	0.9120
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	15.23	0.9165
AT2G37585			Core-2/I-branching beta-1,6-N-...		Potri.006G263000 [exp]	17.23	0.9030
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.001G352300 [exp]	18.76	0.9111
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	20.56	0.9096

Compare expression of checked genes

Potri.002G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.