Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 435 / 2e-146 Protein kinase superfamily protein (.1.2.3) AT1G53050 438 / 5e-146 Protein kinase superfamily protein (.1) AT1G71530 433 / 1e-144 Protein kinase superfamily protein (.1.2) AT5G50860 421 / 1e-140 Protein kinase superfamily protein (.1) AT5G44290 415 / 1e-137 Protein kinase superfamily protein (.1.2.3.4) AT1G33770 412 / 4e-137 Protein kinase superfamily protein (.1) AT1G09600 414 / 1e-136 Protein kinase superfamily protein (.1) AT1G74330 411 / 1e-135 Protein kinase superfamily protein (.1.2) AT3G05050 403 / 1e-133 Protein kinase superfamily protein (.1) AT1G18670 403 / 4e-132 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G077600 [exp] 618 / 0 AT1G54610 451 / 8e-153 Protein kinase superfamily protein (.1.2.3) Potri.005G086900 [exp] 450 / 1e-152 AT1G53050 323 / 3e-102 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 448 / 7e-152 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 443 / 2e-149 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 437 / 3e-147 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 441 / 5e-147 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 440 / 2e-146 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 438 / 5e-146 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 433 / 2e-145 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002469 [exp] 593 / 0 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10000584 [exp] 579 / 0 AT1G53050 429 / 1e-142 Protein kinase superfamily protein (.1) Lus10005801 [exp] 552 / 0 AT1G53050 468 / 2e-157 Protein kinase superfamily protein (.1) Lus10006800 [exp] 523 / 0 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1) Lus10012805 [exp] 446 / 1e-150 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 439 / 4e-146 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 435 / 4e-146 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 434 / 5e-146 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 430 / 3e-144 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 430 / 2e-143 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G065100.1 pacid=42779438 polypeptide=Potri.002G065100.1.p locus=Potri.002G065100 ID=Potri.002G065100.1.v4.1 annot-version=v4.1 ATGTTATTCATCACAGAACCATTAGTCTCTCTCAAGAAAAAAAGGACTGGTATTAGACCAAGAAAGGCCATGGGCTGTGTACAGGGAAAGTATTCAGTAA ATTCATCACCAACCCCAGGAGGGTTAGAGAAGCTCAAAATGGAAAGTGGCTATGTGGGAAAAGGAGATATCGCTGGCCATAGAAGATCCACTGGGCAGAG ATACTCTGGCAGGCTCCCTAAGCCTGAACAACCAACGAGGAAATATAATGGTGGTCGTGCTGGTAATGGTGAAGAGAGGAAATTGAGTGACACAGGTAGA GTGAGATTTGTGGAGTTTGGCGGGGAGGAGGTAGTGGATGGATGGCCCAAGTGGCTAACTGATAACGTTCCTGGAGAGGTTTTGGGTGGTTTGATCCCTA AGAGTGCTGAGAATTATGATAAGCTTGCCAAGGTGGGAGAGGGTACCTATAGCAATGTGTACAAAGCTAGAGATAAGGAAACTGGACAAATTGTTGCCTT GAAGAAGGTCCGATTTGACACGTCAGAACCAGAGAGTGTGAAATTCATGGCACGAGAGATCATGATATTACAGAAGTTGGATCATCCCAATGTGGTAAAG CTTGAAGGACTAGCCACCTCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTTCATGAAGTCTGATTTATCAAAAATCATCTCCCGTCCTGAAGGAA GACTTACTGAACCGCAGGTCAAGTGTTATATGCAACAGCTGCTTTCAGGTCTGCAGCACTGCCATGATAGGGGAATTTTACACAGAGACATTAAAGGATC AAACTTATTAATTGATAAAAATGGGATGCTAAAGATTGCTGATTTTGGGCTTTCAAATTATTATTCCCCGAAACAGAAGCAACCTCTCACAACACGAGTT GTGACACTATGGTACAGAGCTCCTGAGCTATTGCTGGGTGCTACAGACTATGGAACTGGTATTGATCTCTGGAGTGCTGGATGTCTCTTGGCAGAGATGT TCGCAGGCAGGCCTATCATGCCAGGAAGAACAGAGGTCGAGCAGCTGCATAGGATTTTTAAACTATGTGGAACTCCACCAGAGGACTATTGCAAAAAGTT AAAGCTATCTACATCCTTTCGACCTCCACGAACATACAAACCTGGCCTTTTTGAAGCTTTCAGCGAGTTTCCTGAATCAGCTTTGGGTCTGTTAACCACA CTTCTTGCTCTGGATCCTGCATCTCGCGGCTGTGCATCTTCAGCTCTCCAAAATGAATTCTTTCACATAAGTCCTTTGGCATGCGACTTATCAGGCCTCC CGGTGATTAAAAAAGATGAAGATGAGCTCACACAAGCTGATGAACAGAGAAAGCGCAGGAATGCTAAAATGAAACGAAGATCTCAAACATATCGTGAGCG TAAGAAAAAAGATCTGGCAGCTGAAGAACCAAAAGAAGATCCTGCGCAACCGAAAGAGGAGCCAAAGGAGACTCGTGAATCAATCAACCAAAGCCATGAG CCAGGCAGCAGCAGTACTAGTAGCAACTCCTCTGGAACAAAACCGACTCACCTGTTTGAGATGCCACCCAATTTGTTGCAATCCCGAATTGCAACTTCTA AGAAGATGTCTCCAAAAACACAAGGCCATACTAATGCTCCCAAGAACATCAAGAACTTGCCCCCTTTACCTACCTCAAGGACAGGCAGCACCATGTACAA TGTGAACAATGACATGTACAGATTAAATCGAGTCCATAGGTCTGCTTCCACAAGAGAATTCAGAAATTCGATCAAGGGAAGTAGTTAG
AA sequence Show only first row Show all	>Potri.002G065100.1 pacid=42779438 polypeptide=Potri.002G065100.1.p locus=Potri.002G065100 ID=Potri.002G065100.1.v4.1 annot-version=v4.1 MLFITEPLVSLKKKRTGIRPRKAMGCVQGKYSVNSSPTPGGLEKLKMESGYVGKGDIAGHRRSTGQRYSGRLPKPEQPTRKYNGGRAGNGEERKLSDTGR VRFVEFGGEEVVDGWPKWLTDNVPGEVLGGLIPKSAENYDKLAKVGEGTYSNVYKARDKETGQIVALKKVRFDTSEPESVKFMAREIMILQKLDHPNVVK LEGLATSRMQYSLYLVFDFMKSDLSKIISRPEGRLTEPQVKCYMQQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLKIADFGLSNYYSPKQKQPLTTRV VTLWYRAPELLLGATDYGTGIDLWSAGCLLAEMFAGRPIMPGRTEVEQLHRIFKLCGTPPEDYCKKLKLSTSFRPPRTYKPGLFEAFSEFPESALGLLTT LLALDPASRGCASSALQNEFFHISPLACDLSGLPVIKKDEDELTQADEQRKRRNAKMKRRSQTYRERKKKDLAAEEPKEDPAQPKEEPKETRESINQSHE PGSSSTSSNSSGTKPTHLFEMPPNLLQSRIATSKKMSPKTQGHTNAPKNIKNLPPLPTSRTGSTMYNVNNDMYRLNRVHRSASTREFRNSIKGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	1.73	0.8753
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	2.00	0.8587	PIN1,PIN1.3
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	2.00	0.8508
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.008G066400 [exp]	5.19	0.8215	LAX1.1,PtrAUX4
AT1G67280			Glyoxalase/Bleomycin resistanc...		Potri.006G239802 [exp]	5.91	0.8375
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	7.74	0.8534
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	8.48	0.8228
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	12.24	0.8250
AT1G70550			Protein of Unknown Function (D...		Potri.008G188000 [exp]	13.85	0.7934
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	14.42	0.8051

Compare expression of checked genes

Potri.002G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.