Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 543 / 0 DHHC-type zinc finger family protein (.1) AT5G50020 537 / 0 DHHC-type zinc finger family protein (.1.2) AT3G26935 382 / 5e-130 DHHC-type zinc finger family protein (.1) AT5G41060 351 / 3e-118 DHHC-type zinc finger family protein (.1.2) AT3G56930 332 / 7e-110 DHHC-type zinc finger family protein (.1.2) AT3G48760 331 / 1e-109 DHHC-type zinc finger family protein (.1) AT5G05070 300 / 2e-98 DHHC-type zinc finger family protein (.1) AT3G56920 278 / 6e-91 DHHC-type zinc finger family protein (.1) AT2G40990 273 / 7e-88 DHHC-type zinc finger family protein (.1) AT3G04970 90 / 2e-19 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195300 [exp] 751 / 0 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 501 / 4e-178 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 390 / 2e-133 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 390 / 5e-133 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 366 / 2e-123 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 363 / 1e-122 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 361 / 8e-122 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 357 / 3e-120 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 326 / 4e-107 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028737 [exp] 636 / 0 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 629 / 0 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 422 / 6e-147 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 410 / 1e-141 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10032009 [exp] 399 / 8e-137 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 394 / 1e-134 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 348 / 4e-116 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 345 / 4e-115 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 317 / 3e-104 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 295 / 3e-96 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G065500.1 pacid=42777984 polypeptide=Potri.002G065500.1.p locus=Potri.002G065500 ID=Potri.002G065500.1.v4.1 annot-version=v4.1 ATGGCAAAGCGCGTGTTCGAAGTATGGAGAGGGAGTAATAAATTCATCCTTGGTGGGAGATTGATCTTTGGACCTGATGCTAGGTCACTGATTGTCACTT TATTGCTGATCATTGTTCCTATAATAATCTTTTGTGTGTTTGTTGCGAGGCATCTTCGCCATGAATTTTCACCGGATAATGTAGGGTATGTGATTCTGGT GATGGCAATTATCTTTACTATCTATGTGTTGGTTCTTCTTTCCCTCACATCAGCCAGGGACCCAGGCATTATTCCACGCAATTCACATCCACCCGAAGAG GAGTTTCGATATGATTCTTCTGTGTCTGTTGAGGTTGGGGGAAGACAAACACCGAGCCTCCAGTTTCCACGGACAAAAGAAGTTATGGTTAATGGCATTC CTGTTCGGGTTAAGTATTGTGATACATGCATGCTTTATCGTCCTCCCCGCTGCTCCCATTGCTCCATTTGCAACAATTGTGTGGAGCGATTTGATCATCA TTGTCCTTGGGTGGGCCAGTGCATTGGATTGCGCAACTACCGGTACTTCTTTATGTTCGTTTCTTCATCGACTCTTCTCTGCATCTATGTGTTTTCCATG TCTGCCTTGTACATTAAAGTTTTGATGGATGATTACCAAGGCACAGTTTGGAAGGCAATGAAAGAATCTCCTGCATCTGTCATTCTAATGGTCTATAGTT TTATTTCCCTGTGGTTTGTTGGTGGACTTACTGGCTTCCATTTGTACCTCATAGGCACAAACCAGACCACATATGAAAATTTCCGGTACAGAGCTGACAA CAGGATCAATGTCTATGACCTTGGTTGTTTTGATAATTTTCTTGAAGTCTTTTGCACAAAGGTTAAGCCTTCAAAGAACAACTTCAGGGCTTTTGTTCAA GAGGAAGTACAACAAAAGCCCACGTTGCCCAGCACCCAGGAAACAGATGTTGAAGATTCTGGTGGGGATCCACGCTCAAAGGTTGAAGATGACCTAGATA TTGGTGAAGATTTATTGAAAATCTCCCAGCGTCGTAATATTGAAGAACTTGATGAGGACATATGCAGCAGAGGGAGTAATGGGCCACCTCATAATACATC AGAGATGGACTCAGTATTGAGTTCAGATCACCGAGCTCCCACAATTCGATCAGACACTAGACATTCAAGCTGGGGAAGGAGAAGTGGGAGCTGGGAAATT GCACCCGAGGTCCTTGCCAACTCTACAGTCACTGAAAGCAGAACCTACTCCACTTCCAAGGAGCCACACCAATGA
AA sequence Show only first row Show all	>Potri.002G065500.1 pacid=42777984 polypeptide=Potri.002G065500.1.p locus=Potri.002G065500 ID=Potri.002G065500.1.v4.1 annot-version=v4.1 MAKRVFEVWRGSNKFILGGRLIFGPDARSLIVTLLLIIVPIIIFCVFVARHLRHEFSPDNVGYVILVMAIIFTIYVLVLLSLTSARDPGIIPRNSHPPEE EFRYDSSVSVEVGGRQTPSLQFPRTKEVMVNGIPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSSTLLCIYVFSM SALYIKVLMDDYQGTVWKAMKESPASVILMVYSFISLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVYDLGCFDNFLEVFCTKVKPSKNNFRAFVQ EEVQQKPTLPSTQETDVEDSGGDPRSKVEDDLDIGEDLLKISQRRNIEELDEDICSRGSNGPPHNTSEMDSVLSSDHRAPTIRSDTRHSSWGRRSGSWEI APEVLANSTVTESRTYSTSKEPHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24630			DHHC-type zinc finger family p...		Potri.002G065500 [exp]	0	1
AT3G06890			unknown protein		Potri.010G013100 [exp]	6.48	0.7347
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G213500 [exp]	6.48	0.7255
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	11.48	0.6884
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Potri.013G025100 [exp]	12.64	0.5908	Pt-CAX11.1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	15.87	0.7216
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	19.77	0.6741
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128900 [exp]	25.69	0.6886
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	30.00	0.7154	Pt-ATCSLC12.1
AT4G22320			unknown protein		Potri.004G001500 [exp]	30.29	0.5754
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	31.74	0.6976

Compare expression of checked genes

Potri.002G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.