Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43130 407 / 2e-145 LCV2 like COV 2 (.1) AT2G18460 322 / 1e-111 LCV3 like COV 3 (.1) AT2G20120 321 / 3e-111 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 319 / 9e-111 LCV1 like COV 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148000 [exp] 357 / 2e-125 AT1G43130 319 / 2e-110 like COV 2 (.1) Potri.006G158100 [exp] 343 / 6e-120 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 331 / 3e-115 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 317 / 1e-109 AT2G18460 365 / 2e-128 like COV 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028563 [exp] 406 / 7e-145 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10028564 [exp] 403 / 1e-143 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 401 / 6e-143 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10018868 [exp] 379 / 1e-133 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10011099 [exp] 327 / 2e-113 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10014314 [exp] 304 / 3e-103 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10026023 [exp] 304 / 4e-103 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10043220 [exp] 288 / 1e-99 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [poplar] [flax] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Potri.002G065800.2 pacid=42776724 polypeptide=Potri.002G065800.2.p locus=Potri.002G065800 ID=Potri.002G065800.2.v4.1 annot-version=v4.1 ATGGAAGAGGCTAAAGAGCTGGCGTCGAGTTCACTGAGTCAAGGTCTGAATCACCATGGTTCAGACCCTGATGACATCCCCAAGTCCCCTCCTGGGTCCC CCAATTCCTCTACTCGCAAGGCTTGCTATGCTGTTCTTCAAAGTTGGGCCTCTAAGAAGTTCATGACTGGATGTGTTGTTTTGTTTCCAGTGGCAGTTAC ATTTTTAGTGACATGGTGGTTTATTCAGTTTGTTGATGGCTTCTTCAGTCCGATTTACGCCCATCTCGGCATTGACATTTTCGGTCTTGGGTTTGTCACG TCAATCATTTTTATACTTTTCATTGGGATATTTGCTTCTTCGTGGCTGGGTGCCACCGTTTTCTTGGTCGGGGAATGGTTTATTAAGAGAATGCCATTTG TGAAGCACTTATACTCAGCATCTAAACAAATTAGTTCTGCTATTTCTCCAGACCAAAATACTACTGCTTTTAAAGAGGTCGCAATTATTCGACATCCCCG TCATGGCGAATATGCATTTGGTTTCATCACATCATCTTTAGTCCTTCAGAGAGAGAATGGGGATGAAGAGTTATGCAGCGTTTATGTCCCAACCAACCAT CTGTACATTGGTGATGTATTTCTGGTCAATTCAGAGGAGATCATAAGACCAAATTTATCTATTCGAGAGGGCATAGAGATCATTGTTTCTATTGGTATGA CAATGCCTCAAGTGTTATCTCCTATAGAAAGGATTCCTCATCCGAGCAACAGGCTTCCTCTTAATAGAGTTTGA
AA sequence Show only first row Show all	>Potri.002G065800.2 pacid=42776724 polypeptide=Potri.002G065800.2.p locus=Potri.002G065800 ID=Potri.002G065800.2.v4.1 annot-version=v4.1 MEEAKELASSSLSQGLNHHGSDPDDIPKSPPGSPNSSTRKACYAVLQSWASKKFMTGCVVLFPVAVTFLVTWWFIQFVDGFFSPIYAHLGIDIFGLGFVT SIIFILFIGIFASSWLGATVFLVGEWFIKRMPFVKHLYSASKQISSAISPDQNTTAFKEVAIIRHPRHGEYAFGFITSSLVLQRENGDEELCSVYVPTNH LYIGDVFLVNSEEIIRPNLSIREGIEIIVSIGMTMPQVLSPIERIPHPSNRLPLNRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43130		LCV2	like COV 2 (.1)		Potri.002G065800 [exp]	0	1
AT1G11200			Protein of unknown function (D...		Potri.004G035900 [exp]	1.73	0.6827
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	2.44	0.7032	RAB11.15
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	16.97	0.6821	RPT5.2
AT2G24420			DNA repair ATPase-related (.1....		Potri.018G003700 [exp]	21.35	0.6385
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	36.94	0.5929
AT1G27000			Protein of unknown function (D...		Potri.010G092700 [exp]	38.24	0.6510
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	42.07	0.6196	ATFYPP3.2
AT3G02420			unknown protein		Potri.017G110600 [exp]	50.91	0.6273
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.006G055000 [exp]	54.49	0.6047
AT5G10780			unknown protein		Potri.018G016800 [exp]	59.48	0.5729

Compare expression of checked genes

Potri.002G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.