Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43190 727 / 0 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3) AT3G01150 161 / 6e-45 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT5G53180 147 / 2e-39 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G19130 48 / 1e-05 ATRBP47B RNA-binding protein 47B (.1) AT2G42890 47 / 3e-05 AML2, MEI2 MEI2-like 2 (.1.2.3) AT1G11650 44 / 0.0002 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194700 [exp] 786 / 0 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.004G123300 [exp] 153 / 2e-41 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.017G085400 [exp] 149 / 5e-40 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.012G029300 [exp] 142 / 1e-37 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.015G020800 [exp] 139 / 1e-36 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.012G107900 [exp] 43 / 0.0004 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028566 [exp] 643 / 0 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 635 / 0 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10005233 [exp] 141 / 3e-37 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10014931 [exp] 130 / 5e-33 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10030688 [exp] 125 / 2e-31 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10038820 [exp] 123 / 5e-31 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10043204 [exp] 47 / 4e-05 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10032537 [exp] 43 / 0.0005 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G066000.1 pacid=42777338 polypeptide=Potri.002G066000.1.p locus=Potri.002G066000 ID=Potri.002G066000.1.v4.1 annot-version=v4.1 ATGACTGAGCCTTCCAAAGTTATACATGTTCGCAACGTGGGGCATGAAATTTCTGAAAATGACTTGCTTCAGCTGTTCCAGCCATTCGGGGTTATAACGA AGCTTGTTATGCTTCGTGCTAAAAATCAGGCTCTCCTTCAAATGCAAGATGTTCCTTCAGCTATCAATGCTCTCCAACTCTATACAAACATTCAGCCAAC CATAAGGGGAAGGAATGTTTATGTTCAATTCTCATCACATCAAGAACTTACTACAATGGATCAAAATACTCAAGGGCGAGGAGACGAGCCAAATCGAATT CTGTTAGTTACAATACATCACATGCTTTATCCTATTACAGTGGAAGTGCTGCATCAAGTTTTTTCTCCCCATGGATTTGTGGAGAAGATTGTCACGTTTC AGAAGTCGGCTGGTTTTCAAGCCCTTATCCAGTACCAGTCACGCCAGTGTGCTGTTCAGGCTAGGACTTCTCTTCAGGGACGCAATATCTATGATGGCTG CTGTCAGCTGGACATTCAGTTTTCAAACCTGGACGAGCTGCAAGTGAACTACAACAATGACCGCTCAAGGGATTTCACTAATCCTAACCTGCCTTCAGAA CAGAAAGGCAGATCTTCCCAACAGCCAGCATATGGCGATGTAGTTGGATATCCTCCTCAGATGCCCAATGCAGCTGCAATTGCTGCTGCCTTTGGTGGAG GTTTGCCTCCTGGAATTAGCGGGACAAATGATAGATGCACAGTTCTTGCCTCCAATTTAAATCCTGATAGTATAGATGAGGATAAGCTGTTCAACCTGTT TTCTCTCTATGGAAACATAGTGCGGATCAAGCTTCTTCGCAACAAGCCCGACCATGCACTTGTTCAGATGGGGGATGGTTTCCAAGCAGAGTTGGCAGTA CATTTTTTGAAGGGTGCCATGCTTTTTGGAAAGCGATTGGAGGTGAATTTTTCGAAGCACCCAAACATAACTCAAGGTGCTGACACACACGAGTACATGA ACTCTAATCTGAATCGCTTCAACCGTAATGCTGCGAAGAACTACCGATACTGCTGCTCACCAACAAAGATGATTCATCTTTCCACTTTACCTCAGGACAT CACTGAGGAGGAGATTGGGAATCTTGTAGAGGAACACGGGACCATTGTGAACACCAAGCTCTTTGAGATGAATGGGAAGAAGCAAGCCCTTGTTCTGTTT GAAACCGAGGAGGAGGCTACTGAAGCCCTTGTGTGCAAGCATGCTACTTCGCTTGCTGGGTCAATAGTCCGGATCTCGTTCTCCCAGCTACAGTCCATTA GAGAGAACCAATAA
AA sequence Show only first row Show all	>Potri.002G066000.1 pacid=42777338 polypeptide=Potri.002G066000.1.p locus=Potri.002G066000 ID=Potri.002G066000.1.v4.1 annot-version=v4.1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQLYTNIQPTIRGRNVYVQFSSHQELTTMDQNTQGRGDEPNRI LLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQCAVQARTSLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPSE QKGRSSQQPAYGDVVGYPPQMPNAAAIAAAFGGGLPPGISGTNDRCTVLASNLNPDSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAV HFLKGAMLFGKRLEVNFSKHPNITQGADTHEYMNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDITEEEIGNLVEEHGTIVNTKLFEMNGKKQALVLF ETEEEATEALVCKHATSLAGSIVRISFSQLQSIRENQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.002G066000 [exp]	0	1
AT2G34560			P-loop containing nucleoside t...		Potri.011G085200 [exp]	11.00	0.6253
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Potri.001G234800 [exp]	19.33	0.5542
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	20.37	0.5765
AT2G43770			Transducin/WD40 repeat-like su...		Potri.013G128001 [exp]	24.55	0.5563
AT2G38695			unknown protein		Potri.003G190101 [exp]	25.63	0.5848
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Potri.007G019000 [exp]	34.42	0.5424
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.001G153400 [exp]	34.49	0.5544
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	47.91	0.5579
AT2G25970			KH domain-containing protein (...		Potri.018G055300 [exp]	49.35	0.5350
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Potri.004G163700 [exp]	50.83	0.5412

Compare expression of checked genes

Potri.002G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.