Plant FIBer expression Database

Potri.002G066100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20220 199 / 3e-62 Alba DNA/RNA-binding protein (.1)
AT1G76010 198 / 2e-61 Alba DNA/RNA-binding protein (.1)
AT3G07030 160 / 2e-46 Alba DNA/RNA-binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G194600
[exp]
255 / 6e-85 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1)
Potri.002G017600
[exp]
205 / 6e-65 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1)
Potri.005G244300
[exp]
202 / 2e-64 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1)
Potri.002G240601
[exp]
145 / 9e-42 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021844
[exp]
217 / 1e-68 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1)
Lus10034549
[exp]
213 / 2e-67 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1)
Lus10017255
[exp]
206 / 2e-65 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1)
Lus10005615
[exp]
203 / 3e-64 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1)
Lus10022807
[exp]
154 / 5e-44 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1)
Lus10011874
[exp]
154 / 9e-43 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0441 AlbA PF01918 Alba Alba
Representative CDS sequence
>Potri.002G066100.3 pacid=42777154 polypeptide=Potri.002G066100.3.p locus=Potri.002G066100 ID=Potri.002G066100.3.v4.1 annot-version=v4.1
ATGGATCGGTACCAGAGGGTAGAGAAGCCAAGAAACGAAACGCCGATCAATGAGAATGAGATTCGCATTACTACTCAAGGCAGAATGAGGAACTACATTA
CTTATGCCACTACGCTCTTTCAGGAGAAAGGATCTGATGAAATCTCTCTCAAGGCCATGGGCAGAGCCATAAACAAGACTGTGATGATTGCTGAATTGAT
TAAGAGAAGGATTGCTGGTCTTCATCAGAACACATCTATTGGTTCTACTGATATAACTGACACGTGGGAGCCACTAGAGGAGGGTCTTCTCCCCCTGGAA
ACCACTCGTCATGTATCAGTGATAACAGTTACTCTATCCAAGAAGGAACTGGATACATCCTCCACAGGCTATCAATCACCTATTCCAGCTGATCAAGTGA
AACCTTTGGCTGAATATGATTATGAAGGAGAGGGTGGCTCTCCTCGGAGGCAGGGGAGAGGGCGTGGTGGTAGGGGGATTGCTAGAGGTAGAGGAAATAA
TAGCAATGGAGTGGTGGAGCACAATGGAGATGGTGACAGGGTTGGTGGGCGTGGATATGGTGGGAGGGATGGTGGGCGTGGATATGGTGACAGGGATGGT
GGGCGTGGATATGGTGGGAGGGATGGTGGGTATGGATATGGTGGGAGGGATGGCGGGTATGGATATGGTGGGAGGGGCAGAGGTCGTGGAAGAGGACGGG
GTTATCGTGGCCGTGGAAGAGGTTATGGTGGTGGATATATGCAACAACAGTCAGGTGGTTATAATGACTATGGTGGTGGAGCATTTGTTGGCCAAGGCAG
TGGGCGAGGACGAGGCAGGGGCAGGGGTCGTGGGCGTGGCCGGGGTTTCAGATTGGACGGTCCAGCCCAGCCAGCTGAGTGA
AA sequence
>Potri.002G066100.3 pacid=42777154 polypeptide=Potri.002G066100.3.p locus=Potri.002G066100 ID=Potri.002G066100.3.v4.1 annot-version=v4.1
MDRYQRVEKPRNETPINENEIRITTQGRMRNYITYATTLFQEKGSDEISLKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDTWEPLEEGLLPLE
TTRHVSVITVTLSKKELDTSSTGYQSPIPADQVKPLAEYDYEGEGGSPRRQGRGRGGRGIARGRGNNSNGVVEHNGDGDRVGGRGYGGRDGGRGYGDRDG
GRGYGGRDGGYGYGGRDGGYGYGGRGRGRGRGRGYRGRGRGYGGGYMQQQSGGYNDYGGGAFVGQGSGRGRGRGRGRGRGRGFRLDGPAQPAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G20220 Alba DNA/RNA-binding protein (... Potri.002G066100
[exp]
0 1
AT1G80680 NUP96, SAR3, MO... PRECOCIOUS, MODIFIER OF SNC1,3... Potri.003G180100
[exp]
1.73 0.8368 PRE.1
AT1G70180 Sterile alpha motif (SAM) doma... Potri.008G193300
[exp]
2.23 0.7989
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.017G120100
[exp]
4.24 0.8209
AT1G20220 Alba DNA/RNA-binding protein (... Potri.005G194600
[exp]
5.47 0.7956
AT2G35030 Pentatricopeptide repeat (PPR)... Potri.016G038400
[exp]
12.48 0.7454
AT1G52980 AtNug2 nuclear/nucleolar GTPase 2, GT... Potri.001G402500
[exp]
12.96 0.7641
AT2G19540 Transducin family protein / WD... Potri.007G094000
[exp]
15.49 0.7804
AT2G47420 DIM1A adenosine dimethyl transferase... Potri.014G121200
[exp]
15.74 0.7866
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
16.24 0.7844
AT2G43110 unknown protein Potri.014G150100
[exp]
17.86 0.7543

Potri.002G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.