Plant FIBer expression Database

Pt-ARP1.2 (Potri.002G066200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ARP1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43170 701 / 0 RPL3A, ARP1, EMB2207 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
AT1G61580 691 / 0 RPL3B, ARP2 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G194500
[exp]
781 / 0 AT1G43170 686 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Potri.003G008300
[exp]
664 / 0 AT1G61580 626 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035786
[exp]
701 / 0 AT1G61580 683 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
Lus10006181
[exp]
696 / 0 AT1G43170 679 / 0.0 embryo defective 2207, ribosomal protein 1 (.1.2.3.4.5.6.7.8.9)
Lus10041041
[exp]
641 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
Lus10037360
[exp]
620 / 0 AT1G61580 612 / 0.0 ARABIDOPSIS RIBOSOMAL PROTEIN 2, R-protein L3 B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF00297 Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence
>Potri.002G066200.4 pacid=42779878 polypeptide=Potri.002G066200.4.p locus=Potri.002G066200 ID=Potri.002G066200.4.v4.1 annot-version=v4.1
ATGTCTCACAGGAAGTTCGAGCACCCAAGACATGGCTCCCTTGGATTTCTTCCAAGGAAGAGAGCTGCCCGTCACAGAGGAAAAGTGAAGTCTTTCCCCA
AGGATGACCCTAATAAGCCTTGCAAGCTTACTGCCTTTTTGGGTTACAAGGCTGGCATGACCCACATTGTCAGAGAGGTCGAAAAACCTGGATCCAAGCT
CCACAAGAAGGAGACATGTGAGGCTGTAACCATCATTGAGACACCTCCAATGGTGATTGTTGGAGTTGTGGGTTACTTGAAGACACCATCTGGCCTCCGG
ACTCTGAACACTGTTTGGGCTCAGCATTTGAGTGAAGAGGTCAAGCGAAGGTTCTACAAGAACTGGTGCAAGTCAAAGAAGAGGGCTTTCAACAAATACT
CAAAGCAGTATGAGACAGATGAAGGGAAGAAGAGCATCCAATCACAGCTTGAGAAGTTGAAGAAATATGCAACTGTTATTCGTGTTTTGGCTCACACTCA
GATCAGAAAGATGAAAGGATTGAAGCAGAAGAAAGCTCACTTGATGGAGATCCAGGTTAATGGTGGCACAATTGCTCAGAAGGTGGATTTTGCTTATGGT
TTCTTTGAGAAGCAAGTCCCAATTGATGCTGTCTTCCAGAAGGATGAGATGATTGATATTATTGGTGTCACGAAGGGTAAGGGTTATGAAGGTGTTGTCA
CTCGTTGGGGTGTCACTCGCCTGCCTCGGAAGACCCACAGGGGTCTCCGAAAGGTGGCTTGTATCGGTGCCTGGCACCCTGCAAGAGTCTCATTCACTGT
TGCCAGGGCTGGTCAGAATGGATACCACCACCGTACTGAATTGAACAAGAAGATCTACAAGCTTGGCAAGACCGGTCAGGAGTGTCACACTGCCATAACG
GAGTATGACAGGACTGAAAAGGACATCACTCCAATCGGTGGTTTCCCTCACTATGGTGTGGTGAAGGATGACTATTTGATGATCAAGGGATGCTGCGTTG
GACCTAAGAAGAGGGTGGTTACACTCCGTCAAACACTGCTTAAACAGACATCTCGATTGGCTCATGAGGAAATCAAACTCAAGTTTGTGGACACATCCTC
GAAGTTCGGACATGGTCGTTTCCAGACAACACAGGAGAAGCAGAAGTTCTATGGACGCCTGAAGGCATAA
AA sequence
>Potri.002G066200.4 pacid=42779878 polypeptide=Potri.002G066200.4.p locus=Potri.002G066200 ID=Potri.002G066200.4.v4.1 annot-version=v4.1
MSHRKFEHPRHGSLGFLPRKRAARHRGKVKSFPKDDPNKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVIVGVVGYLKTPSGLR
TLNTVWAQHLSEEVKRRFYKNWCKSKKRAFNKYSKQYETDEGKKSIQSQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAQKVDFAYG
FFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKTGQECHTAIT
EYDRTEKDITPIGGFPHYGVVKDDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAHEEIKLKFVDTSSKFGHGRFQTTQEKQKFYGRLKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Potri.002G066200
[exp]
0 1 Pt-ARP1.2
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.013G128600
[exp]
2.44 0.8999
AT3G44750 HDT1, HDA3, ATH... HISTONE DEACETYLASE 2A, histon... Potri.004G188800
[exp]
4.00 0.8939 HDT902,Pt-HD2.1
AT3G57490 Ribosomal protein S5 family pr... Potri.006G052400
[exp]
5.65 0.9080 Pt-RPS2.2
AT1G57720 Translation elongation factor ... Potri.004G226300
[exp]
6.92 0.8747
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.002G099500
[exp]
8.77 0.8844
AT3G53020 RPL24B, STV1 SHORT VALVE1, Ribosomal protei... Potri.012G139400
[exp]
10.39 0.9047
AT1G33140 PGY2 PIGGYBACK2, Ribosomal protein ... Potri.001G454101
[exp]
16.73 0.8908
AT2G47110 UBQ6 ubiquitin 6 (.1.2) Potri.014G115100
[exp]
22.24 0.8759 Pt-UBI.3
AT4G18100 Ribosomal protein L32e (.1) Potri.014G191000
[exp]
22.44 0.8666
AT5G08180 Ribosomal protein L7Ae/L30e/S1... Potri.008G110100
[exp]
24.69 0.8789

Potri.002G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.