Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39350 1656 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G64740 1652 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1648 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1624 / 0 CESA5 cellulose synthase 5 (.1) AT4G32410 1358 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G17420 1351 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 1333 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT2G25540 1313 / 0 CESA10 cellulose synthase 10 (.1) AT4G18780 1187 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT1G02730 771 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194200 [exp] 1929 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 1761 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G087500 [exp] 1739 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 1515 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1514 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1386 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G029400 [exp] 1384 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1379 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.011G069600 [exp] 1244 / 0 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041063 [exp] 1692 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1687 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1685 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1627 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 1363 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1355 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 1349 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1347 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007296 [exp] 1194 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 1192 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2 CL0229 [poplar] [flax] RING PF14569 [poplar] [flax] zf-UDP Zinc-binding RING-finger
Representative CDS sequence Show only first row Show all	>Potri.002G066600.2 pacid=42777078 polypeptide=Potri.002G066600.2.p locus=Potri.002G066600 ID=Potri.002G066600.2.v4.1 annot-version=v4.1 ATGGAGACCAAAGGGAGACTCATTGCAGGTTCTCACAATAGAAATGAGTTTGTTCTTATCAATGCTGATGAAATTGCAAGAGTCACCTCTGTTAAAGAAT TAAGTGGGCAGATTTGCAAGATCTGTGGGGATGAGATAGAGGTTACAGTGGACGGGGAGCCATTTGTTGCTTGCAATGAATGTGCGTTCCCTGTGTGTAG ACCTTGCTATGAGTATGAAAGAAGAGAAGGCAATCAAGCCTGCCCTCAATGCCGAACCAGATACAAGCGTATCAAAGGGAGTCCTAGAGTTGACGGGGAT GAGGAAGAGGAAGATACGGATGATTTGGAGAATGAATTTGATATTGGTGTCAATGACAGGAGAGACCCTCGCCATGTTGCTGAAGCCTTGCTCTCTGCTC GCCTCAACACTGGTCGTGGTTCACAAGCCCATGTTTCTGGGTTCGCTACACCATCTGAGTTTGACTCTGCTTCCGTTGCTCCTGAAATTCCTCTCCTGAC CTATGGTGAAGAGGATGTCGGAATCTCTTCTGATAAGCATGCCCTTATCGTACCCCCATTTCATGGAAAACGGATACACCCAATGCCGTTTTCTGATTCT TCAATTCCTTTGCCACCAAGGCCTATGGATCCTAAGAAAGACTTGGCGGTGTATGGGTATGGAACGGTTGCGTGGAAGGAAAGAATGGAGGAGTGGAAGA AAAAGCAGAGTGATAAACTTCAGGTGGTCAAGCACCAAGGAGGAAAGGGTGGTGAAAACAATGGTGGAGATGAATTGGATGATCCTGATTTGCCTATGAT GGATGAAGGAAGGCAGCCTCTTTCAAGGAAATTACCAATTTCTTCAAGCAAGATTAGTCCATACAGATTGATCATTATACTCAGGCTTGTGATTCTCGGC CTCTTTTTTCACTATAGAATTCTTCATCCAGTCAACGATGCCTATGGATTGTGGCTTACATCAGTAATTTGTGAAATATGGTTTGCCGTATCTTGGATAT TAGATCAGTTTCCAAAGTGGTATCCAATTGAGCGAGAAACATATCTAGATAGATTATCATTGAGGTATGAGAAAGAGGGGAAGCCATCTGAGTTGGCGAG TGTGGACGTATTTGTTAGCACAGTTGATCCTATGAAAGAACCTCCACTTATCACTGCAAACACAGTCTTGTCCATCCTTGCTGTAGATTATCCAGTCGAT AAAGTTGCATGCTATGTCTCAGATGATGGTGCGGCCATGCTTACTTTTGAAGCTATCTCTGAGACATCTGAATTTGCAAGAAAGTGGGTCCCTTTCTGCA AGAGGTTCAGCATTGAACCTCGAGCTCCAGAATGGTATTTTGCTCAGAAGGTTGACTATTTGAAAGACAGAGTAGATCCAGCATTTATCAGGGAACGTCG TGCAATGAAGAGAGAGTATGAAGAGTTCAAAGTTCGAATAAATGGGTTAGTTGCCACGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGC ACTCCATGGCCAGGGAATAATGTCAGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGTCATAATGGAGTTCATGATGTTGAGGGAAATGAATTGCCTC GTCTAGTTTACGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACAAGAAAGCTGGGGCTATGAATTCTTTGGTGAGGGTCTCTGCAATCATAACAAA TGCTCCTTACATGCTGAATGTTGATTGTGATCATTATATAAACAACAGTAAGGCACTTCGAGAAGCCATGTGCTTCATGATGGACCCGACATCTGGAAAG AAAATCTGTTATGTGCAATTTCCACAAAGATTTGATGGGATTGATCGTCATGATAGATACTCAAATCGTAATGTCGTATTCTTTGATATCAATATGAAAG GATTGGATGGCATACAAGGACCTATATATGTTGGTACTGGATGTGTCTTCAGGAGGCAAGCACTTTATGGGTACGATGCCCCTATCAAGAAGAAGCCCCC AGGGAGGACATGCAATTGCTTGCCAAAATGGTGCTGCTGCTGTTGCCGATCTAAAAAGAAGAATAAGAAATCAAAATCAAATGAAAAAAAGAAGAGCAAG GATGCTTCTAAGCAGATACATGCATTAGAAAATATCGAGGAGGGAATTGAAGGAATAGATAATGAAAAATCAGCCTTGATGCCTCAAATAAAATTTGAGA AAAAATTTGGACAGTCATCGGTTTTCATAGCGTCTACACTTATGGAAGATGGTGGGGTGCCAAAAGGAGCAAGTTCTGCGTCACTTTTGAAAGAAGCCAT TCACGTCATCAGTTGTGGTTATGAAGATAAAACTGAATGGGGGAAAGAGATTGGGTGGATTTATGGCTCTGTCACTGAGGATATATTAACTGGCTTCAAG ATGCATTGTCATGGCTGGCGATCAGTGTATTGCATGCCAAAAAGACCTGCATTTAAAGGCTCAGCTCCAATAAACCTTTCAGATCGTCTACACCAGGTTC TCCGATGGGCGCTGGGATCTGTTGAGATTTTATTGAGTAGACATTGTCCAATATGGTATGGATATGGATGTGGATTGAAATGGTTGGAGCGCTTCTCTTA CATAAACTCTGTTGTTTATCCCTTGACATCGATCCCCTTGATTGCCTACTGTACCTTACCTGCTGTCTGTCTACTTACTGGGAAATTCATTGTTCCCGAG ATTAGTAACTATGCCAGTATCATTTTCATGGCTCTCTTCATATCCATAGCTGCAACTGGTATCCTCGAAATGCAGTGGGGAGGTGTTGGCATACATGACT GGTGGAGAAATGAGCAGTTCTGGGTCATTGGCGGTGCCTCGGCGCATCTATTTGCTCTTTTCCAGGGTCTTCTGAAGGTTCTGGCTGGAGTTAACACCAA TTTCACTGTCACCTCCAAAGCAGCAGATGATGGAGAATTTTCAGATCTCTACCTATTTAAATGGACATCTTTGTTGATCCCTCCTATGACTTTGCTTATC ATAAACATTATCGGAGTCGTAGTTGGAATTTCCGATGCCATCAACAATGGTTACGAGACTTGGGGTCCACTCTTTGGTAAGCTATTCTTTGCGTTGTGGG TTATAGTTCACCTTTACCCATTCCTCAAGGGGTGGTTAGGGAAACAAGACAGGCTTCCCACCATTATTGTCGTTTGGTCGATTCTTCTAGCTTCTGTTTT AACACTTCTATGGGTTCGAATCAACCCATTTGTGTCAAAAGGTGGCATTGTTTTAGAAGTTTGTGGGTTGGATTGCAATTAA
AA sequence Show only first row Show all	>Potri.002G066600.2 pacid=42777078 polypeptide=Potri.002G066600.2.p locus=Potri.002G066600 ID=Potri.002G066600.2.v4.1 annot-version=v4.1 METKGRLIAGSHNRNEFVLINADEIARVTSVKELSGQICKICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCRTRYKRIKGSPRVDGD EEEEDTDDLENEFDIGVNDRRDPRHVAEALLSARLNTGRGSQAHVSGFATPSEFDSASVAPEIPLLTYGEEDVGISSDKHALIVPPFHGKRIHPMPFSDS SIPLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQSDKLQVVKHQGGKGGENNGGDELDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIIILRLVILG LFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVD KVACYVSDDGAAMLTFEAISETSEFARKWVPFCKRFSIEPRAPEWYFAQKVDYLKDRVDPAFIRERRAMKREYEEFKVRINGLVATAQKVPEDGWTMQDG TPWPGNNVRDHPGMIQVFLGHNGVHDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIITNAPYMLNVDCDHYINNSKALREAMCFMMDPTSGK KICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPIKKKPPGRTCNCLPKWCCCCCRSKKKNKKSKSNEKKKSK DASKQIHALENIEEGIEGIDNEKSALMPQIKFEKKFGQSSVFIASTLMEDGGVPKGASSASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFK MHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPE ISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASAHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSDLYLFKWTSLLIPPMTLLI INIIGVVVGISDAINNGYETWGPLFGKLFFALWVIVHLYPFLKGWLGKQDRLPTIIVVWSILLASVLTLLWVRINPFVSKGGIVLEVCGLDCN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39350		ATH-A, CESA2, A...	cellulose synthase A2 (.1)		Potri.002G066600 [exp]	0	1
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.018G029400 [exp]	2.00	0.7333	Pt-CESA1.2
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G194200 [exp]	3.16	0.7096	CESA2.6
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	4.69	0.7341
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	8.83	0.7121
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	8.94	0.7266
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	10.19	0.6945
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147400 [exp]	10.81	0.7102	Pt-DFR1.4
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147701 [exp]	12.00	0.6968
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	14.96	0.6904
AT1G47380			Protein phosphatase 2C family ...		Potri.014G031200 [exp]	15.29	0.6728

Compare expression of checked genes

Potri.002G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.