Plant FIBer expression Database

Potri.002G066900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43580 576 / 0 Sphingomyelin synthetase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G193300
[exp]
761 / 0 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028111
[exp]
590 / 0 AT1G43580 580 / 0.0 Sphingomyelin synthetase family protein (.1)
Lus10042814
[exp]
588 / 0 AT1G43580 585 / 0.0 Sphingomyelin synthetase family protein (.1)
Lus10040720
[exp]
44 / 0.0003 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF14360 PAP2_C PAP2 superfamily C-terminal
Representative CDS sequence
>Potri.002G066900.2 pacid=42778512 polypeptide=Potri.002G066900.2.p locus=Potri.002G066900 ID=Potri.002G066900.2.v4.1 annot-version=v4.1
ATGAGGTGGGGGTTCTCACCGCCTAAAATCACCTGCGGTTTAGGACTGGCGGCAATTTCTTATGTGGCGGTGGACTATTTGCGCCACCTGTCCCCAGCGT
GGCACGAGCGTCTCCAGCCAGCACTATGGTCAATACTCGCCCTAATCGCCATCTCTCGTGTCCCTTTCTACAAGCACTGGTCATCTGAGTTTAGAGCTGC
CATTCCCTTTGTTGCTTCTATGCTGTTTATGCTCGCTTGTTTTCTCTTAGAGGCTCTCTCTGTGCGCTTGGTCACTGCTGTTCTTGGCCTTGATTGGCAC
AGTGAAACACCTCCTCTACCTGACACTGGCCAGTGGTTACTCCTTTCACTGAATGAAAAGCTTCCTGGACCATTAGTTGAGATTCTAAGAGCTCGTATTA
TCGGACTTCACCATTTCCTGATGTTGTTTATGATGCTGGCTTTTTCCGTGTTATTTGACTCCGTAGAAGCTCCCGGTCTCGGTCTTGGTGCAAGATACAT
GTTCACTATGGCAATTGGCCGTCTTCTTCGGGCTATAACTTTTGTATCTACAATTCTACCTTCAGCCCGGCCTTGGTGTGCTGCAGCTCGGTTTAGAGTC
CCTGCATACCCTCACCACTGGGCTCAAAAATATTATGTTCCTTATGCTTCAGATGCTGATGCTATTCGTCAGATAATAAATCGGGATATAGCTTATGCTG
ATACTGGGGAATACCATGGTGATTACCATCCAGATTGGGGTTCCATGAACTTCCTTGTAAATTTCTTACGACCCACTCCTGCAGAAGGAGCTTCATGGTT
TAGTCTTCTGAAGAGAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTAGCTGTGCTGACAGCTATGGCTTGGACGGAAGCATAT
GGAGGCTTTAGCTCCGCCTTCATATGGCTGCTTGTAATGCACAGTGCCCAGAGAGAAATTCGGGAACGCCACCATTACACTGTAGACTGCATTGTGGCCA
TTTATGTCGGCATCCTTCTCTGGAAGATGACTGGTTTTATCTGGCCAGCCAAGGATTCAATGAGAAGTAGAAGACTCGCAAAACTTGAGAGAATTCAAGG
TAGATTAATCCAAGCTGCAAAAGATTCAGACATGGACGAAGTGAGGGAGCTTCTCAAGGAGGTTGAGTTGCGCAGTCAAGAGAGCCAGCACAAAGGCCAC
AGCAGGTATTTGTGGTTGTTTTCTTGTGCGACCATTTTCTTAGCACTAACAATTGTCCTTCTAGCTTTCACTTGGACAAGCGACGGTTGA
AA sequence
>Potri.002G066900.2 pacid=42778512 polypeptide=Potri.002G066900.2.p locus=Potri.002G066900 ID=Potri.002G066900.2.v4.1 annot-version=v4.1
MRWGFSPPKITCGLGLAAISYVAVDYLRHLSPAWHERLQPALWSILALIAISRVPFYKHWSSEFRAAIPFVASMLFMLACFLLEALSVRLVTAVLGLDWH
SETPPLPDTGQWLLLSLNEKLPGPLVEILRARIIGLHHFLMLFMMLAFSVLFDSVEAPGLGLGARYMFTMAIGRLLRAITFVSTILPSARPWCAAARFRV
PAYPHHWAQKYYVPYASDADAIRQIINRDIAYADTGEYHGDYHPDWGSMNFLVNFLRPTPAEGASWFSLLKRAGGGCNDLLYSGHMLVAVLTAMAWTEAY
GGFSSAFIWLLVMHSAQREIRERHHYTVDCIVAIYVGILLWKMTGFIWPAKDSMRSRRLAKLERIQGRLIQAAKDSDMDEVRELLKEVELRSQESQHKGH
SRYLWLFSCATIFLALTIVLLAFTWTSDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43580 Sphingomyelin synthetase famil... Potri.002G066900
[exp]
0 1
AT2G01930 BBR_BPC BPC1, BBR/BPC1,... basic pentacysteine1 (.1.2) Potri.008G140200
[exp]
3.46 0.8347
AT2G05840 PAA2 20S proteasome subunit PAA2 (.... Potri.016G139600
[exp]
4.47 0.8541 PAA1.4
AT1G71900 Protein of unknown function (D... Potri.013G114100
[exp]
8.48 0.8444
AT1G77110 PIN6 PIN-FORMED 6, Auxin efflux car... Potri.005G187500
[exp]
10.58 0.8215 PIN4,Pt-PIN6.2
AT2G27730 copper ion binding (.1) Potri.004G201700
[exp]
12.64 0.7946
AT1G28410 unknown protein Potri.004G048500
[exp]
13.22 0.7810
AT5G62880 ARAC10, ATRAC10... RHO-RELATED PROTEIN FROM PLANT... Potri.012G077800
[exp]
13.78 0.8202
AT1G78770 APC6 anaphase promoting complex 6 (... Potri.011G108800
[exp]
14.83 0.7603
AT2G44525 Protein of unknown function (D... Potri.014G179500
[exp]
17.23 0.7814
AT5G55760 SRT1 sirtuin 1 (.1) Potri.001G368100
[exp]
18.16 0.7549

Potri.002G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.