Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43620 800 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT3G07020 586 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24750 64 / 2e-10 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193100 [exp] 1059 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.002G238600 [exp] 587 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G178300 [exp] 585 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G021100 [exp] 73 / 3e-13 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018878 [exp] 851 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10028572 [exp] 835 / 0 AT1G43620 840 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011882 [exp] 590 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 568 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 546 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 534 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 531 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 493 / 2e-168 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 411 / 2e-136 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 190 / 2e-55 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [poplar] [flax] GT-B PF03033 [poplar] [flax] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G067100.1 pacid=42778582 polypeptide=Potri.002G067100.1.p locus=Potri.002G067100 ID=Potri.002G067100.1.v4.1 annot-version=v4.1 ATGGGTAGTAATGCATTTGATCATCCATTAAAAAAATCAGAAGAGGAAGGACTTGAAAGCAGCTATAAGCTGAAAAGGAGTATTGATCAGATCAGTGGTG GTGATGAATCCGTAACAGTTGATTATGCGTCCTCAGAGGAACAGTCTGAAGCAGGTCCTCTTCAGGAAGCAGAGAAGCAGAGGACAAAGTCAGGGAAGCA GTCATCAACTCTAGAGATTTTCAAATCAAAAGAATTGAATTTTTCTCCTTCACCTCGAAAAGGCATGAATCGCTGCATCACCACACCTGTTGAAACTCAT AGACACGCGCTGTTCAATGATGATGATAATATTACATTCCATAGATCCATGACGGAGAACAGGGCTTCAAGGCATGAGCTAAAATTGAACAGACTGTCAG AGCGTGAAAAGAAGAAACTAATCATAGAGCTAGTCAAGATCCAAAACGATGGAACAGTTGAAGTTGATATAGATGAAAATGCTCCTGTTGCTTCGGAGTT GTTAGAGCTTCACTCAGTTGAAGGGGCATCCTTTTATGTCAATGAAAGCATTTCTGGTTGCAATAAACCAATCCCAAGATTGAAAGTTGCCATGCTTGTG GTTGGAACAAGAGGAGATGTACAGCCCTTTCTAGCCATTGCAAAAAGACTTCAGGAATTCGGTCATCGTGTTAGGCTAGCCACTCATGCTAACTTCCGCG ACTTTGTAAGATCGGCTGGTGTAGATTTCTATCCTTTGGGCGGTGATCCTCGGGTGTTGGCAGGATATATGGCCAGAAACAAAGGTTTCATCCCATCCGC GCCTGGAGAAATATCCATACAGAGGAAACAACTGAAGGCCATTATTGAGTCTCTTCTTGCAGCGTGCACAGAACCAGATATGGAAACTGGTGTGCCTTTC AAAGCCCAGGCAATTATTGCCAACCCTCCAGCATATGGACATGCACATGTTGCTGAAGCTCTCGGTGTACCGATTCACATTTTCTTCACAATGCCTTGGA CGCCAACATATGAATTTCCTCATCCTTTAGCACGTGTACCTCAAAGTGCTGGTTATTGGCTTTCATACATAGTTGTGGATTTACTGATATGGTGGGGAAT AAGAGGATATATTAATGAATTCAGGAAAAGAAAGTTGAAGCTTCCACCGATCGCCTACTTAAGTATGTACCATGGATCAATATCTCATCTGCCAACAGGT TATATGTGGAGCCCCCATCTTGTGCCAAAGCCAAGTGACTGGGGACCCTTAGTAGATGTTGTTGGTTATTCTTTCTTGAACCTTGGATCAAAATATGAAC CTATAGAAGAGTTCATGCAATGGATTCAGAAAGGAAAGGAACCCATATATATTGGATTTGGGAGCATGCCTCTTGAAGATCCCAAGAATACGATGGACAT AATATTGGAGGCTTTGAAAGATACTGGACAAAGAGGAATAGTTGATCGAGGTTGGGGAGATCTTGGAAATTTCATGGAAGTACCTGACAGTGTCTTCCTT TTGAAGGATTGCCCTCATGATTGGTTGTTTCCTCAATGTGCTGCCGTGGTTCATCACGGTGGTGCTGGAACCACGGCTACTGGGCTAAGAGCTGGGTGCC CGACAACTATAGTGCCATTCTTTGGCGACCAGTTCTTCTGGGGTGATCGAGTGCATCAAAAAGGGCTGGGGCCTGTACCAATACCGATAGCTAAGCTCAG TGCTGAGAACCTTTCAGATGCAATAAGGTTCATGCTAGAGCCTGAGGTTAAATCTCGAGCTATGGAATTGGCTAAGTTGATAGAAAATGAAGATGGCGTT GCAGCTGCAGTTGATGCATTTCACCGGCATTTACCCCCCGAGCTACCCTTGCCTACTTCGTCATCAGAGGACAATGACCAGCCAAACCCCCTGCAATGGT TCTTTATTCAAATTGAAAAGTGGTGCTGCCTACCTTGTTCGTAA
AA sequence Show only first row Show all	>Potri.002G067100.1 pacid=42778582 polypeptide=Potri.002G067100.1.p locus=Potri.002G067100 ID=Potri.002G067100.1.v4.1 annot-version=v4.1 MGSNAFDHPLKKSEEEGLESSYKLKRSIDQISGGDESVTVDYASSEEQSEAGPLQEAEKQRTKSGKQSSTLEIFKSKELNFSPSPRKGMNRCITTPVETH RHALFNDDDNITFHRSMTENRASRHELKLNRLSEREKKKLIIELVKIQNDGTVEVDIDENAPVASELLELHSVEGASFYVNESISGCNKPIPRLKVAMLV VGTRGDVQPFLAIAKRLQEFGHRVRLATHANFRDFVRSAGVDFYPLGGDPRVLAGYMARNKGFIPSAPGEISIQRKQLKAIIESLLAACTEPDMETGVPF KAQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIVVDLLIWWGIRGYINEFRKRKLKLPPIAYLSMYHGSISHLPTG YMWSPHLVPKPSDWGPLVDVVGYSFLNLGSKYEPIEEFMQWIQKGKEPIYIGFGSMPLEDPKNTMDIILEALKDTGQRGIVDRGWGDLGNFMEVPDSVFL LKDCPHDWLFPQCAAVVHHGGAGTTATGLRAGCPTTIVPFFGDQFFWGDRVHQKGLGPVPIPIAKLSAENLSDAIRFMLEPEVKSRAMELAKLIENEDGV AAAVDAFHRHLPPELPLPTSSSEDNDQPNPLQWFFIQIEKWCCLPCS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.002G067100 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	2.00	0.8219
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.001G400300 [exp]	5.83	0.8133
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G101800 [exp]	6.48	0.7781
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	7.34	0.7855
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	10.81	0.8076
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	11.66	0.8060
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	12.96	0.7647
AT1G69450			Early-responsive to dehydratio...		Potri.008G091200 [exp]	22.11	0.7047
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	23.21	0.7444
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	23.32	0.7858

Compare expression of checked genes

Potri.002G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.