Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 128 / 2e-33 Protein of unknown function (DUF677) (.1) AT3G19330 99 / 8e-23 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 95 / 1e-21 Protein of unknown function (DUF677) (.1) AT4G34320 55 / 3e-08 Protein of unknown function (DUF677) (.1) AT2G18630 48 / 5e-06 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193000 [exp] 583 / 0 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 167 / 4e-48 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 158 / 1e-44 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 129 / 4e-34 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 86 / 2e-18 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.004G150800 [exp] 68 / 2e-12 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 62 / 1e-10 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 62 / 1e-10 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 42 / 0.0005 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028573 [exp] 134 / 4e-37 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10005612 [exp] 137 / 1e-36 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 136 / 2e-36 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 104 / 1e-24 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10031977 [exp] 99 / 7e-23 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10017348 [exp] 96 / 9e-22 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 88 / 3e-20 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10035125 [exp] 74 / 2e-15 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10018879 [exp] 64 / 1e-12 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1) Lus10018880 [exp] 66 / 2e-12 AT5G66660 39 / 0.001 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF05055 [poplar] [flax] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Potri.002G067300.1 pacid=42779647 polypeptide=Potri.002G067300.1.p locus=Potri.002G067300 ID=Potri.002G067300.1.v4.1 annot-version=v4.1 ATGATGTGGGCCAAATTTAGAGCTTCAAAGAACAGAAAAGACGGGAAGGAATTCAGCGATGCCTGTAAAAGCTTGAATGTCAACGAAGAGTACCTTAGCG CTTTGCGAACCCAATCCTTTGCTGATTTTTTCACCAAGGCTCAATCACTTGTAAACGGGCCATCTTTTCCAACTCACTGCCATCGCAAATTTTCTGAAAT TCTCCTGGAACCAGGTCAAGAATCTATACCTGTAATTCTCGAATCAGCTCTTCTTTCAAAAGTGCCTGAACTCAAAGGGCTTATGCTCAATTACTTTGAC GTCAGTGCTGAGGCTTCAAATATATGCAGCCACCTGCTAAAAAACATAAACCAAATCCAATCTAGTTACGTGTTCATTCAAAGAGTGCTAAATAGTATCG ACGATTGCTCGCCTGAGAAAGTGAAATTGATTGTCTCGGAGCTGAACTCATTCATTATCCAAAGCAATCCGTTTTCAACCCCTAACAAGCATGACTTCAA GTTAATTAACGACAGGTACTTACTGGTTTTAAACCGCCTAAAATCCAAAAGAAACAAGGTGGCTAGGAAGATGAAGCTCATTGCATGTATCCATAAGGCT ACAGGAATTTGCATAGCTGCAGCTTGTAGCTTAATTGCAATCACAACTATTGTTCTAGCAGCACATACTCTTACTGCACTGGTTATGGGCCCAGCCATTT TCAGCCTCCCAATAAAGCACTTCAAGAAACAGCTCACGAGTTTCAAGTTTCTGAGAAGTGGATTCCTGAGGAAAGTTGGGCAACAGCTTGATGTGGCAGC CAAGGGAACTTACATATTGAATAGGGATTTTGACACAATAAGCAGCCTTGTATCTAGGCTTCACGATGAAGTTGAGCACGACAAGGCAATGATACAGTTC TGTTTGGAGAGAATAGAGGATAAGTTTTCTTTACAAGTGATAAAGGAGCTTAAGAAGAGTGATATTGGGTTTAGGAAGCAGGTAGAGGAGCTTGAAGAGC ATTTGTATCTCTGCCTGCTAACGATTAATCGAGCAAGAGCATTAGTGATCGAGGAAATCACAGCATCTAGCAGTGAACATTTGAAGTAG
AA sequence Show only first row Show all	>Potri.002G067300.1 pacid=42779647 polypeptide=Potri.002G067300.1.p locus=Potri.002G067300 ID=Potri.002G067300.1.v4.1 annot-version=v4.1 MMWAKFRASKNRKDGKEFSDACKSLNVNEEYLSALRTQSFADFFTKAQSLVNGPSFPTHCHRKFSEILLEPGQESIPVILESALLSKVPELKGLMLNYFD VSAEASNICSHLLKNINQIQSSYVFIQRVLNSIDDCSPEKVKLIVSELNSFIIQSNPFSTPNKHDFKLINDRYLLVLNRLKSKRNKVARKMKLIACIHKA TGICIAAACSLIAITTIVLAAHTLTALVMGPAIFSLPIKHFKKQLTSFKFLRSGFLRKVGQQLDVAAKGTYILNRDFDTISSLVSRLHDEVEHDKAMIQF CLERIEDKFSLQVIKELKKSDIGFRKQVEELEEHLYLCLLTINRARALVIEEITASSSEHLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20180			Protein of unknown function (D...		Potri.002G067300 [exp]	0	1
					Potri.008G112166 [exp]	5.47	0.7442
AT5G36130			Cytochrome P450 superfamily pr...		Potri.003G222001 [exp]	7.74	0.7890
					Potri.010G135150 [exp]	9.00	0.8105
AT3G07620			Exostosin family protein (.1)		Potri.014G170900 [exp]	24.00	0.7896
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G170100 [exp]	33.36	0.7820
AT2G43870			Pectin lyase-like superfamily ...		Potri.007G144100 [exp]	38.49	0.7836
AT5G20045			unknown protein		Potri.008G015800 [exp]	39.98	0.7359
AT3G05390			unknown protein		Potri.004G231100 [exp]	57.23	0.7623
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.013G009000 [exp]	61.60	0.6803
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144500 [exp]	73.48	0.6849

Compare expression of checked genes

Potri.002G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.