Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GBF4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44080 142 / 6e-40 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 103 / 6e-26 bZIP GBF4 G-box binding factor 4 (.1) AT2G36270 58 / 3e-09 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G45249 57 / 7e-09 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT1G49720 56 / 1e-08 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 56 / 2e-08 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT2G41070 54 / 2e-08 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT4G34000 55 / 4e-08 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G56850 52 / 2e-07 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT4G35900 49 / 3e-06 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192900 [exp] 320 / 3e-109 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G101200 [exp] 56 / 1e-08 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 55 / 3e-08 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 55 / 3e-08 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.009G018500 [exp] 54 / 4e-08 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 53 / 1e-07 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248100 [exp] 52 / 2e-07 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 52 / 2e-07 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 52 / 3e-07 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029784 [exp] 172 / 3e-51 AT5G44080 166 / 7e-49 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028575 [exp] 148 / 2e-42 AT5G44080 191 / 2e-59 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042811 [exp] 122 / 6e-33 AT5G44080 86 / 2e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10018857 [exp] 116 / 4e-31 AT5G44080 126 / 4e-35 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 59 / 2e-09 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 58 / 3e-09 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 58 / 3e-09 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 58 / 4e-09 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042810 [exp] 53 / 4e-09 AT1G03970 71 / 2e-16 G-box binding factor 4 (.1) Lus10002399 [exp] 56 / 1e-08 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.002G067400.2 pacid=42776957 polypeptide=Potri.002G067400.2.p locus=Potri.002G067400 ID=Potri.002G067400.2.v4.1 annot-version=v4.1 ATGGCGTCGTCGAAGGTGATGGCGTCGTCGAAACCTAGAAATTCGGATCCATCTTCAACAACTTCATCTCGATCGCGACGCGCCACTTCTTCTTCTTCTG CCACTAATACTACAGCAAAACCAGCTTATCAATCTACTGACCGATTATTTCAAAAGGAATCAACAATGACAGTTGACGGCATCCTACGTAGCGTGTACGC GTCTCCATCAACCGAATCGACTCTTCTCGACGCACAAATAACCCTAATGGAATCCCCTGACCATCTCCCTCATCCACAAATCGAAACAGATGATACCGAC GATCAAGATATGAGTGATATAATTCCACAAGAGAACAAGACTGCGGATGATATTTGGAGAGAAATTGTTGTGGGGAGAAAGGAAATGAAGGATGAGCCGG ACGAGATGATGACTTTGGAGGATTTTTTAGCGAAGGCAGGGGCGGTGGATGTGGTTGGAGAGGATGGGGATGAGGTCAAGATGCCGCCGCCTGAGAGGTT GAGTGGAGGATTGTATGCGTTTGATTCTTTGCCACCGAGTTCATTTCAGGTGCTGGATAAGGAGGAAGGGTCGATTGTTGGCTTTGGGAATGGAGTGGAG GTGGAGCTTGTTGCTGGTAGTGGTGGTGGTGGCAGTGGTGGAGGAAGAGGGAAGAGAGGAAGGGGTGTGGCAATGGAACCCTTGGATAAGGCGGCACAGC AGAGGCAGAGGAGGATGATTAAGAATCGGGAGTCTGCTGCTCGCTCCAGAGAGAGGAAGCAGGCTTATCAAGTGGAATTGGAGTCTTTGGCAGTGAGGTT AGAGGAGGAGAATGAGCAGCTGCTTAAAGAGAAGGAAGAGAGGACTAAGGAAAGGTTTAAGCAGGTACTGATTCTATTCCTTGACTATTTTTCTTCTGAC ACACTGAAAACATTAAACCCTGGTATAACACTCTATGATGTTTGCAAGTGA
AA sequence Show only first row Show all	>Potri.002G067400.2 pacid=42776957 polypeptide=Potri.002G067400.2.p locus=Potri.002G067400 ID=Potri.002G067400.2.v4.1 annot-version=v4.1 MASSKVMASSKPRNSDPSSTTSSRSRRATSSSSATNTTAKPAYQSTDRLFQKESTMTVDGILRSVYASPSTESTLLDAQITLMESPDHLPHPQIETDDTD DQDMSDIIPQENKTADDIWREIVVGRKEMKDEPDEMMTLEDFLAKAGAVDVVGEDGDEVKMPPPERLSGGLYAFDSLPPSSFQVLDKEEGSIVGFGNGVE VELVAGSGGGGSGGGRGKRGRGVAMEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKEERTKERFKQVLILFLDYFSSD TLKTLNPGITLYDVCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	0	1	Pt-GBF4.1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	3.00	0.8228
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	3.16	0.7229
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	6.32	0.7432
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.014G114900 [exp]	7.74	0.7219
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	8.12	0.7099
AT4G13110			BSD domain-containing protein ...		Potri.008G199100 [exp]	10.58	0.7242
AT2G25760			Protein kinase family protein ...		Potri.001G189100 [exp]	16.24	0.7186
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Potri.013G131300 [exp]	20.73	0.6483
AT3G13670			Protein kinase family protein ...		Potri.001G009700 [exp]	21.21	0.7144
AT1G31870			unknown protein		Potri.003G087200 [exp]	24.24	0.7381

Compare expression of checked genes

Potri.002G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.