Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21090 189 / 1e-59 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192800 [exp] 300 / 2e-103 AT1G21090 159 / 7e-48 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028576 [exp] 216 / 5e-70 AT1G21090 182 / 6e-57 Cupredoxin superfamily protein (.1) Lus10018856 [exp] 211 / 2e-68 AT1G21090 181 / 2e-56 Cupredoxin superfamily protein (.1) Lus10029783 [exp] 184 / 2e-57 AT1G21090 172 / 1e-52 Cupredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G067600.1 pacid=42776983 polypeptide=Potri.002G067600.1.p locus=Potri.002G067600 ID=Potri.002G067600.1.v4.1 annot-version=v4.1 ATGAAGATTCCCTCCACGCTTCTCCTACTGTTATCTCTTCTCTCTCTACAATCGCAACCTTCTTGCTCCACAACAATACTAGTGGATGGCGTTTCAGAGT GGAAAGACCCCAATGTTTATATAGGAGATTCCATCATTTTCAAACACAAGTTTCACTACAGCTTGTACATTTTCCAGAACCAAAGAGCTTTTAATATCTG CAACTTCACTCAAGCTACACTTCTCACCAAGCCCAACTCCACCTCCTACACGTGGTACCCATCACGCCCTGGTTTCTTCTACTTCACATTCAACAATGGC TCCCTAAAATCCTGCAATCAAGACTCACAAAAACTCTCCATAAAAGTCTCTCCAGCACCACCACCACCACCGGCACAACTCCCTCCAACGGCATCACCTC CAGTTCCAGCACAAATTCCAGGCGACATTGTGTCATCATCTCCTGCATACCAGTGGCCATCCCGTCCTCGTGATGAAACAGCCTTTTCCCCTGCTCCTGA ACCTGGTGGTAGTGCTGCAAGCTCTCCAATGGCGACAGTGCCAACATTGATGCCAGATAAAGGTGGTGGTATTCCTTTTATTAATAGCAACCCCGCTGTT CCTCTGCCTACTGGTGAAATTGATTCTGCCACTATTAGGCCCTTGCCCACCTCCGGCCATCATAAACTGGTGGCAGTGGGGTTACTTGGATTTCACATGC CTCTATTTTGTGTGGTTTTACTGCTGCCGCTGCTGTAA
AA sequence Show only first row Show all	>Potri.002G067600.1 pacid=42776983 polypeptide=Potri.002G067600.1.p locus=Potri.002G067600 ID=Potri.002G067600.1.v4.1 annot-version=v4.1 MKIPSTLLLLLSLLSLQSQPSCSTTILVDGVSEWKDPNVYIGDSIIFKHKFHYSLYIFQNQRAFNICNFTQATLLTKPNSTSYTWYPSRPGFFYFTFNNG SLKSCNQDSQKLSIKVSPAPPPPPAQLPPTASPPVPAQIPGDIVSSSPAYQWPSRPRDETAFSPAPEPGGSAASSPMATVPTLMPDKGGGIPFINSNPAV PLPTGEIDSATIRPLPTSGHHKLVAVGLLGFHMPLFCVVLLLPLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	1.41	0.9117
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	3.00	0.8919
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	3.31	0.9150
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	4.89	0.9090
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	7.74	0.9020
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Potri.017G083000 [exp]	8.06	0.9016	GASA4.2
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	8.48	0.8928	DTA4.1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	8.77	0.8900	Pt-NHX1.1
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	9.79	0.8272
AT4G38660			Pathogenesis-related thaumatin...		Potri.004G173200 [exp]	12.32	0.8688

Compare expression of checked genes

Potri.002G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.