Plant FIBer expression Database

Potri.002G067700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76770 160 / 2e-46 HSP20-like chaperones superfamily protein (.1)
AT1G76780 83 / 1e-16 HSP20-like chaperones superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G192700
[exp]
301 / 4e-97 AT1G76770 147 / 2e-40 HSP20-like chaperones superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028577
[exp]
211 / 4e-64 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1)
Lus10018882
[exp]
204 / 1e-61 AT1G76770 153 / 2e-44 HSP20-like chaperones superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0190 HSP20 PF00011 HSP20 Hsp20/alpha crystallin family
Representative CDS sequence
>Potri.002G067700.1 pacid=42778345 polypeptide=Potri.002G067700.1.p locus=Potri.002G067700 ID=Potri.002G067700.1.v4.1 annot-version=v4.1
ATGGAGCTTGAACCGGGGCTCAAAATCATCCGCACTAGAGATGATATCAGCTCCTTCACCGACCTTCGGATTGCTAAAGATCATGCCGGTCCTCTTTTCT
TTTCTAGAGAAACCGAGAACATGTTCACCCTTATTGGATATCTCAAAGGTTTTAGAAAGGAGAATACTGACATCAAGATTAATGAAGATGGTGATCGGAT
CTCAATTAGTGGGAAGAAGCCAGTTCAGGAGATGGTGTTGATAGGGTGGATTATGCACAAAAAAGAGGTTGAGTTACGGTCATTCCGGAAGGCCTTCCGA
ATTCCTGATGGGGTCGTTTTGGATAAAATCAAGGCAAGATTCGATGATGAAGAATCGACTTTGACGATTATTCTTCCGAAATTGGTGAAAGGAATTCTTG
ATGTTGAGCTAGAGGAAGTTAAGGGAGAGGAGGTTGATAAAGGGAGAGGTGAAGCTACACAAGCTGTAGCTGACAAGGCACCTGAAGGAGAGAGTAGGGA
GCCAGAGTTGAAGAGGGTGGAACAAAGTGACCAAGCTTTGCAAAATAAAAGGGTTGTTGAGCAAAAGGCTGATGCAGCTGAAATAGTGCCTGAAAGAGTT
GTAGATACAACGTTACAAAAGAAACTAGAGCCTAAGGATCAAAGCGAATTAGAAGAAGCCACTCCTGAAAAGGCAGAACCTCCTTCTACTACCACCGCCG
CTACATATCAGGAAACAGTAATCAAGAAACCTAAGCTAGTTTTGCCTGAGAAAGAGATCGAACACCAAGAGTCAAAAAAGGCCGCTCCAGCTGAAGAAAC
TAGAAGTGAGGAGCTTCCCGGTTTGAAAGAGCAGGGGAAGAAACAGGAAACTCCAGAGGCCAAGAGCACTCGTGAAGAAACGTTGGAAAAACACCCTCAT
GGACCAGAGCTCAATCAATTGACAGAAGCTGTCATGGATCAAGAGACTAAACCACCAGAAGTGTCAAACCAACCATCAGCGCAAGCTGATCAAGGACATA
CAGAAGAAGCAAATCATGTAGTCAAGACTGAAATATCACACGAATCAGAAAAGCTGGAAACAGAAAAAAATGTTCAAGAACCAACGATACCCGAACCTGA
TCAAGAAAAAAAGCTGGCTGAAACTCCACATCCTGCATACAAGTCAAGAAACAATGAGGCCCAAGGAAGCAAAGAAAGCCATGGAATAGGAAATGATATC
AAAGAAGCAGCAACGAATAGAAAGAATCCTGTTTCAAGAAGAACTAAGCTATGTCCTCCTCTTGTTGTTGCAGGGTCGGCCATTCTCGTCTCTATCGTAG
TGTTTGTCATTGGTTGGATTAGAGCTAAGAAAAGATGA
AA sequence
>Potri.002G067700.1 pacid=42778345 polypeptide=Potri.002G067700.1.p locus=Potri.002G067700 ID=Potri.002G067700.1.v4.1 annot-version=v4.1
MELEPGLKIIRTRDDISSFTDLRIAKDHAGPLFFSRETENMFTLIGYLKGFRKENTDIKINEDGDRISISGKKPVQEMVLIGWIMHKKEVELRSFRKAFR
IPDGVVLDKIKARFDDEESTLTIILPKLVKGILDVELEEVKGEEVDKGRGEATQAVADKAPEGESREPELKRVEQSDQALQNKRVVEQKADAAEIVPERV
VDTTLQKKLEPKDQSELEEATPEKAEPPSTTTAATYQETVIKKPKLVLPEKEIEHQESKKAAPAEETRSEELPGLKEQGKKQETPEAKSTREETLEKHPH
GPELNQLTEAVMDQETKPPEVSNQPSAQADQGHTEEANHVVKTEISHESEKLETEKNVQEPTIPEPDQEKKLAETPHPAYKSRNNEAQGSKESHGIGNDI
KEAATNRKNPVSRRTKLCPPLVVAGSAILVSIVVFVIGWIRAKKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76770 HSP20-like chaperones superfam... Potri.002G067700
[exp]
0 1
AT1G53420 Leucine-rich repeat transmembr... Potri.006G014066
[exp]
9.05 0.9173
Potri.001G054850
[exp]
9.11 0.8388
AT1G33420 RING/FYVE/PHD zinc finger supe... Potri.013G092000
[exp]
10.95 0.8907
AT2G27460 sec23/sec24 transport family p... Potri.004G201800
[exp]
11.83 0.8466
AT5G49010 EMB2812, SLD5 SYNTHETIC LETHALITY WITH DPB11... Potri.010G147050
[exp]
15.36 0.9048
AT5G59720 HSP18.2 HSP18.1... heat shock protein 18.2 (.1) Potri.008G062350
[exp]
18.57 0.9047
AT1G16740 Ribosomal protein L20 (.1) Potri.004G095475
[exp]
18.81 0.9046
AT5G15250 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) Potri.017G084000
[exp]
21.97 0.9026
AT5G13570 TDT, DCP2, ATDC... TRIDENT, decapping 2 (.1.2) Potri.008G039500
[exp]
22.36 0.7447
AT5G28540 BIP1 heat shock protein 70 (Hsp 70)... Potri.013G018000
[exp]
23.49 0.9026 HSP70.11

Potri.002G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.