Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43650 356 / 3e-122 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 296 / 2e-98 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 235 / 4e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 224 / 5e-70 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 223 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 223 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 215 / 9e-67 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 207 / 2e-63 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 206 / 3e-63 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 205 / 2e-62 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 586 / 0 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.019G004100 [exp] 286 / 3e-94 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 274 / 7e-90 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 273 / 3e-89 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148600 [exp] 258 / 1e-83 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 248 / 6e-79 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 241 / 2e-76 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 238 / 2e-75 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 236 / 6e-75 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018889 [exp] 360 / 3e-123 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028585 [exp] 350 / 2e-119 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028586 [exp] 328 / 8e-108 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018890 [exp] 268 / 6e-89 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041634 [exp] 245 / 1e-77 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 242 / 1e-76 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 239 / 1e-75 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 233 / 1e-73 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 236 / 5e-73 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 231 / 9e-73 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G068300.1 pacid=42778054 polypeptide=Potri.002G068300.1.p locus=Potri.002G068300 ID=Potri.002G068300.1.v4.1 annot-version=v4.1 ATGAAGAGTTTGCGTGGTAGTCTAAATGCCGTGGAGAACTATAAGCCTTACGTTGCAATGCTCTTTGTACAATTTGTGTATGCAGGCATGGCTTTGTTCT CCAAGGCTGCAATTTCTAAAGGGATGAATTCTCATGTCTTTGTCGTTTATCGCCAAGCTTTCGCCTCGGTTTCTTTGGCTCCATTAGCTTTCTTTCTTGA AAGAAAGGAGGGTGCTCCCCTGTCGTGGAGCTTACTTTTCAAGATTTTTTTGGTTTCCTTGTGTGGAGTTACTATGAGCTTGAACCTCTACTATATTGCA ATCAGCTATACCACTGCAACATTTGCTGCTGCAACTACTAACACAATTCCTGCCATTACATTTGTCATGGCAGCCTTATTGAGGATGGAAAGCATTTCCA TAAAACATTTGCATGGAATTGCCAAGGTGCTGGGTTCTGTTATATGTGTTTCTGGAGTGCTAGTGTTTGCTTTTGTTAAGGGGCCTCCCGTAAACTTTAT GAATTGGTACCCATCCAATGATCACAAGCAAGTTCAGGATTCATCAAAAACTTGTTGCTCCAGAGAGGAGTGGATAAAAGGTTCTCTTATCATGATCTCA GCAAATACGCTTTGGTCTCTGTGGCTTGTTTTGCAGGGTCCCATTGTCAAGCAATATCCAGCAAAACTACGCCTTACCACTCTACAATGCGTGTTTAGCT GCATACAGTCAGCCTTTTGGGCCATTGCGGTAGAGAGGAACCCTTCAGCCTGGAAGCTCGGCTGGGATCTTAAACTTCTGTCGGTTGCCTACTGTGGTAT AATTGTCACTGGAATTTCTTTCTGGCTGCAAGTATGGGTGATAGAGAAGAAAGGACCACTTTTCACATCAATGTTCACTCCGTTGGCACTGATTATAACA GCAATTTTCTCAGCATTCTTGTGGAAAGAAACCCTTCATTGGGGAAGTGCTGGTGGGGATGTTTTGTTGATGGGTGGGCTTTATTGTGTATTATGGGGCA AGAAGAGAGAAGAAGATAGGAAAAGCGTAACAACAGATGAACAGAATACAGAAACTAAAGAGAAAATCACTCTGGAGTGCATTACAAGTCACTGA
AA sequence Show only first row Show all	>Potri.002G068300.1 pacid=42778054 polypeptide=Potri.002G068300.1.p locus=Potri.002G068300 ID=Potri.002G068300.1.v4.1 annot-version=v4.1 MKSLRGSLNAVENYKPYVAMLFVQFVYAGMALFSKAAISKGMNSHVFVVYRQAFASVSLAPLAFFLERKEGAPLSWSLLFKIFLVSLCGVTMSLNLYYIA ISYTTATFAAATTNTIPAITFVMAALLRMESISIKHLHGIAKVLGSVICVSGVLVFAFVKGPPVNFMNWYPSNDHKQVQDSSKTCCSREEWIKGSLIMIS ANTLWSLWLVLQGPIVKQYPAKLRLTTLQCVFSCIQSAFWAIAVERNPSAWKLGWDLKLLSVAYCGIIVTGISFWLQVWVIEKKGPLFTSMFTPLALIIT AIFSAFLWKETLHWGSAGGDVLLMGGLYCVLWGKKREEDRKSVTTDEQNTETKEKITLECITSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.002G068300 [exp]	0	1
					Potri.001G379400 [exp]	4.47	0.9114
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	4.47	0.9304
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Potri.016G057400 [exp]	6.48	0.9244
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.002G074800 [exp]	7.34	0.8347	Pt-ACR3.1
					Potri.012G054000 [exp]	8.12	0.9162
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	9.59	0.8955	HMT3.1
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	9.79	0.9099
					Potri.001G239700 [exp]	11.22	0.9052
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G179300 [exp]	11.31	0.9148
AT1G17100			SOUL heme-binding family prote...		Potri.010G044200 [exp]	11.66	0.8246

Compare expression of checked genes

Potri.002G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.