Plant FIBer expression Database

Potri.002G068333 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G068333.1 pacid=42779662 polypeptide=Potri.002G068333.1.p locus=Potri.002G068333 ID=Potri.002G068333.1.v4.1 annot-version=v4.1
ATGCACCACCCACGCGCCAACACTGCTCTCTTTCCTCCAGCAGCTTTGTTGCAGTTACAGTTGACTTCCACGACTCGCAAAGGTGCTGCTGAGGGCTTTT
TAAGAAAGATCAAATTGCAAACGCACGATGAGAAAAAGGATTTTATCAAAAGAGTCTGTCGTGCATTTATACATACATACTCACGCATGCCTCAGGACTG
GATTGCGACCCTAGCAGAATTGAAGGCTTATGACCCGTCTCTATTGTACGCATAG
AA sequence
>Potri.002G068333.1 pacid=42779662 polypeptide=Potri.002G068333.1.p locus=Potri.002G068333 ID=Potri.002G068333.1.v4.1 annot-version=v4.1
MHHPRANTALFPPAALLQLQLTSTTRKGAAEGFLRKIKLQTHDEKKDFIKRVCRAFIHTYSRMPQDWIATLAELKAYDPSLLYA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G068333
[exp]
0 1
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Potri.009G098800
[exp]
1.41 0.8989
AT2G02820 MYB ATMYB88 myb domain protein 88 (.1.2) Potri.010G093000
[exp]
7.74 0.8672 MYB124.2,MYB196
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Potri.019G015768
[exp]
16.43 0.8466
AT3G05950 RmlC-like cupins superfamily p... Potri.019G026200
[exp]
17.49 0.8738
AT4G14860 OFP ATOFP11 ovate family protein 11 (.1) Potri.010G087200
[exp]
17.54 0.8761
AT1G27660 bHLH bHLH110 basic helix-loop-helix (bHLH) ... Potri.005G119601
[exp]
17.66 0.8295
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Potri.001G101500
[exp]
21.16 0.8653
AT2G48090 unknown protein Potri.014G137850
[exp]
21.90 0.8820
AT1G72830 CCAAT NF-YA3, ATHAP2C... "nuclear factor Y, subunit A3"... Potri.006G145100
[exp]
22.24 0.8413 HAP2.6
AT5G42830 HXXXD-type acyl-transferase fa... Potri.014G025600
[exp]
24.18 0.8655

Potri.002G068333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.