Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76890 387 / 8e-128 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 260 / 8e-79 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G03680 174 / 7e-47 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT5G28300 149 / 3e-38 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 148 / 1e-37 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 127 / 1e-31 Trihelix Homeodomain-like superfamily protein (.1) AT3G10000 117 / 7e-28 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT3G25990 63 / 2e-10 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 58 / 4e-09 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 52 / 5e-07 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192000 [exp] 613 / 0 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 424 / 9e-142 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G309100 [exp] 365 / 2e-120 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 350 / 2e-114 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G191900 [exp] 265 / 7e-83 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 172 / 9e-49 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 172 / 3e-47 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049700 [exp] 171 / 6e-46 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2) Potri.006G221400 [exp] 169 / 6e-45 AT1G76890 162 / 1e-42 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029778 [exp] 250 / 3e-74 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 245 / 2e-73 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 244 / 6e-72 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 207 / 4e-60 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 197 / 2e-56 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 178 / 4e-48 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 168 / 1e-45 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 139 / 2e-35 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10028582 [exp] 129 / 7e-33 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10039080 [exp] 131 / 1e-32 AT5G47660 176 / 3e-50 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G068400.1 pacid=42778261 polypeptide=Potri.002G068400.1.p locus=Potri.002G068400 ID=Potri.002G068400.1.v4.1 annot-version=v4.1 ATGATCGGTGATTCAAGTGTGCAAGCAACCTCTAGTGATGTTGCGGCCACAGCTACCAGGGTCGCCACTGAAGGTGGTGAGGGTGGTGGTGGAGGTGGTT TTGGTTCAAATTCAGCTGAAGAAGATAAGACTATGGGGGCTGATCATGAAGGTAACCGGATGAATTATGGTGCAAACCGGTGGCCTAGGCAAGAGACTTT GGCCTTACTGAAGATAAGGTCCGATATGGATGCAGTGTTTCGTGACTCAGGTCTAAAAGGTCCGTTATGGGAAGAGGTTTCCAGGAAACTAGCAGAGCTT GGTTATCATCGGAGTGCCAAGAAATGCAAGGAGAAATTCGAGAACGTGTACAAATACCACAAGCGAACCAAAGAAGGCCGAACAGGTAAATCCGAAGGAA AATCTTACAAGTTTTTTGATGAATTAGAAGCTTTCCAAAATCATCCTCCACATTCAACACAACCGCCAACATTGACGCCGCCGCCGCTGCCACCACCAAA TGCTCAAACTGCATCTGCAACAATTACCACATTGCCATGGACTAATAACAACACCGCTATCGTCTCTCATGCTACTGTTCCATCAAGAACAAACCCTATG GATATCATGTCACAAAGCATTGCTACACCAACCAACAACCGTGCAATTAGTCCGATGCCAATATCTTCAAATCCCATAAATCCTTCTCAAAATGCTTACC CATCTTCTTTGCAAAACCTCACTACACATCTTTTGGCTAGTTCTAGTCCATCATCAACAGCATCAGATGAAGAGTTGGAAGTAAGTTATAAGAAGAGAAA GAGAGAGAGCAACTGGAAGGACTTTTTTGAGAGGCTAACGAGGGATGTCATCAAGAAGCAAGAGGATTTGCAGGAGAAATTCTTGGAAACGATTGAGAAA TACGAGCATGAAAGAATGGCACGCGAAGAGGCATGGAGAATGCAAGAGATGGCAAGAATCAATAGAGAACATGAAACTTTAATCCAAGAACGATCCACGG CAGCAGCAAAAGATGCTGCAGTTGTTGCCTTCTTGCAAAAGATATCGGGACAGCAAAACTCAGTTCAAACACAAGAAATCCCACAACCAACAACAACTCC AACAGCACCTCCGCCACAGCCATTACAGCTTAGGCCACCACCCACCAGTCTCGCACCGGTTGCAAAATTGGAGGTTCCAAAAAGGGATAATGGATATAAT TTTACTGTATCAAGCTCTTCTAGATGGCCAAAAGTAGAAGTTCAAGCTCTTATTAATCTCAGAGCCAATCTTGATGTTAAGTATCAAGAAAATGGAGCTA AAGGGCCTTTATGGGAGGATATTTCAGCTGGAATGCAAAAGCTTGGATATAATAGGAGTGCAAAGAGATGCAAAGAGAAATGGGAGAATATAAACAAGTA TTTCAAGAAAGTAAAAGAGAGCAACAAGAAGAGGCCTGAAGATTCAAAAACATGTCCATACTTCGACCAGCTCGATGCTCTATACAAGGAGAAAAATAAA ATGGAAATTACAGTCAACTCAGATTATGCTGTCAAGCCAACTAGCACAATGGATCAGCCACTAATGGTACGACCAGAACAACAATGGCCTTTTCAACAAG CAACCCAGCCTCAGACAATCATTGAAGATAACGAAAGAAATATTAACATCGATCACAATATTGAAGATGATGATGATGATGATGTTGTTGTTGATGATGA TGATGTAGATACTGATGAAGAGGATGAGGGAGGTGGCTTTGAGGTAGTAGCAAACAAATCAGCTCCCTTGGTCAATGGTGATCAGTAA
AA sequence Show only first row Show all	>Potri.002G068400.1 pacid=42778261 polypeptide=Potri.002G068400.1.p locus=Potri.002G068400 ID=Potri.002G068400.1.v4.1 annot-version=v4.1 MIGDSSVQATSSDVAATATRVATEGGEGGGGGGFGSNSAEEDKTMGADHEGNRMNYGANRWPRQETLALLKIRSDMDAVFRDSGLKGPLWEEVSRKLAEL GYHRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKSYKFFDELEAFQNHPPHSTQPPTLTPPPLPPPNAQTASATITTLPWTNNNTAIVSHATVPSRTNPM DIMSQSIATPTNNRAISPMPISSNPINPSQNAYPSSLQNLTTHLLASSSPSSTASDEELEVSYKKRKRESNWKDFFERLTRDVIKKQEDLQEKFLETIEK YEHERMAREEAWRMQEMARINREHETLIQERSTAAAKDAAVVAFLQKISGQQNSVQTQEIPQPTTTPTAPPPQPLQLRPPPTSLAPVAKLEVPKRDNGYN FTVSSSSRWPKVEVQALINLRANLDVKYQENGAKGPLWEDISAGMQKLGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFDQLDALYKEKNK MEITVNSDYAVKPTSTMDQPLMVRPEQQWPFQQATQPQTIIEDNERNINIDHNIEDDDDDDVVVDDDDVDTDEEDEGGGFEVVANKSAPLVNGDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	0	1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.002G181600 [exp]	3.00	0.9333
AT1G03160		FZL	FZO-like (.1.2)		Potri.005G209200 [exp]	3.46	0.9425
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	4.00	0.9456
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	4.47	0.9321
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	6.48	0.9444
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	7.34	0.8935
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	8.24	0.9194	Pt-GLU1.2
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Potri.017G043100 [exp]	12.12	0.9137
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	14.66	0.9009
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	17.34	0.9351	RSH1.2

Compare expression of checked genes

Potri.002G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.