Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SEC5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21170 1490 / 0 SEC5B Exocyst complex component SEC5 (.1) AT1G76850 1479 / 0 SEC5A exocyst complex component sec5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191500 [exp] 1903 / 0 AT1G21170 1419 / 0.0 Exocyst complex component SEC5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011294 [exp] 1620 / 0 AT1G76850 1431 / 0.0 exocyst complex component sec5 (.1) Lus10040488 [exp] 1555 / 0 AT1G76850 1363 / 0.0 exocyst complex component sec5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF15469 [poplar] [flax] Sec5 Exocyst complex component Sec5
Representative CDS sequence Show only first row Show all	>Potri.002G068900.1 pacid=42777651 polypeptide=Potri.002G068900.1.p locus=Potri.002G068900 ID=Potri.002G068900.1.v4.1 annot-version=v4.1 ATGTCAAGCGATAGCGACGATGACGACGAGCTTCTCCAGATGGCATTAAAGGAACAATCTCAACGCGATCTCAACTACCAGCGCCCGCCGTCGAATCAGC GCAAGCCGGTTGTCAATTTCGTCCAGCAGCCAAGGCAACCGCCTCCCCCGCAGAGGCCGGCGCCGACGAAGAACATGGCGAATCAGACGAAGAGTAGGAT AGCAGTGGAGGATGATGATGATTCGGAGGTGGAAATGCTGAGCATATCGAGCGGTGATGAGGAGGTTAGTAAGGACCGTGGCGGTGGAGGAGGTGCGGCA GCGAGAGGGAGAGGTGGACGTGGCGCCGGAGGGAGGGAGGAGGAGAGAGGGTGGGATGGCGAAGAGCCTGATTGTTGGAAAAGAGTTGACGAAGCTGAGC TTGCTCGTAGGGTTCGTGACATGCGAGAGTCGAGAACTGCACCGGTGGCTCAAAAGTTTGAGCGGAAGCCTTCAGCATTGGCTAGAAAGGGGCTCAACAC TCTGCAATCATTTCCCCGTGGCATGGAATGCATTGATCCACTTGGATTAGGGATTATAGATAACAAATCATTAAGGTTGATCACTGATTCATCAGAAAGC TCTCCATCAAAATCTGATAGAGATCACTTGGACAATATCCTTCGTGAGAAGTTGTTGTATTTCTCTGAAAACTTTGATGCAAAGCTATTCCTATCCCGAA TACATCAAGATACAAGTGCAGCAGAGTTGGAGGCTGGTGCGCTTGCTTTAAAAACTGATCTCAAAGGGCGGACTCAACAGAGAAAGCAGTTGGTTAAAGA CAATTTTGACTGCTTTGTCTCTTGCAAGACTACAATTGATGATATAGAATCAAAATTGAGACGGATTGAAGAAGATCCTGAAGGTTCCGGGACTTCACAC CTGTATAACTGCATGCAAGGAGTAAGCTCACTTGCTAATCGTGCTTTTGAGCCTCTATTTGAGAGACAGGCCCAAGCTGAGAAGATAAGATCTGTGCAAG GAATGCTTCAGAGATTTCGAACACTGTTTAACTTGCCTAGTACAATTCGTGGAAGCATTGGTAAGGGTGAATATGACCTAGCAGTTCGGGAATACAAGAA GGCGAAGTCAATTGCTCTACCCTCTCATGTGAACATACTAAAACGTGTTCTAGAAGAGGTTGAAAAGGTGATGAATGAGTTCAAAGGAACACTTTACAAG TCTATGGAAGATCCACAAATAGATCTTACAAATCTTGAAAACACAGTGAGGCTGTTGTTGGAGCTGGAACCTGAGTCAGATCCCGTGTGGCATTATTTGA ATGTACAGAATCACCGAATTCGTGGATTGCTTGAGAAGTGCACCTTAGATCATGAAGCAAGAATGGAAACCTTGCATAATGAGATGCGTGAAAGAGCTCT TTCTGATGCAAAGTGGAGGCAAATTCAACAAAATCTGAATCAATCTTCAGATGTTGACCATTCTCTTATGATGGGGAACATCCCTCCACCAGTAGATTCC CAGCCAGTAGATTTGAGTGGTGAAGAAGTTGATGCTCTTAGAGGAAAGTACATCAGAAGGTTGACTGCTGTGCTTACACATCACATACCAGCCTTCTGGA AAGTTGCTCTGTCTGTTTTCAGTGGGAAATTTGCAAAGTCTTCCCAAGTTTCTGCTGAATCAAATGTTAATGCTTCAGCAACTAAAAGCGAGGAAAAGGT TGGAGATGGGAGGTACTCTGCTCATTCTCTCGATGAAGTTGCTGGTATGATACGAGGTACCATATCTGCATATGAAACTAAGGTCCATAACACATTTCAT GATCTTGAGGAATCAAACATTCTCCAGTCTTATATGAGTGATGCTATAAAGGAAATATCTAAAGCCTGCCAAGCTTTTGAAGTGAAAGAATCGGCTCCAC CTACTGCTGTGATGGCACTTAGAACCCTTCAGGCAGAGATTACAAAGATTTACATAATTAGGCTTTGCTCTTGGATGCGGGCAATGACAGAAGAGATATC AAAAGAAGAAACTTGGATTCCAGTATCTATTCTTGAAAGGAATAAATCTCCTTACACAATTTCTTTCTTGCCTCTAGCATTCCGCTCAGTTATTGCCTCT GCAATGGATCAAATCAGTCAAATGATTCAATCCTTAAGGAGTGAGGCTGGAAGGTCAGAAGATATGTTTGCTCTGCTACAAGAAATTCAAGAATCTGTCC GACTTGCCTTCTTAAACTGTTTCCTAGATTTTGCTGGCCATTTGGAACAAATTGGGAGTGAGCTTGCCCAAAACAAATCAAGCAAAGAAAGTTTGCATTT ACAGAATGGATATTCTCATGAATCAGAAGAAAAATTATCATCTAATCTCCAAGGAAGTGTTGTTGATTCACATCAACAATTGTTGTTAGTGTTGAGCAAC ATTGGATTTTGCAAAGATGAACTTTCATATGAGTTGTTCAACAAGTATAAAACCATTTGGTTGCAGTCCAGGGAAAAGGATGAAGAGGGCAGTGATATTC AAGATCTTGTAATGTCTTTCTCTGGACTCGAAGAGAAGGTCCTTGCCCAGTATACTTTTGCAAAGGCAAATTTGATCAGAACAGCAGCTATGAACTATTT GCTGAACTCTGGTGTTCAATGGGGAGCAGCACCTGCAGTTAAAGGTGTACGTGATGCGGCTGTGGAGTTATTGCACACTTTAGTAGCTGTGCACTCAGAG GTTTTTGCTGGTGCTAAGCCCCTCTTGGACAAGACGCTTGGTATTCTTGTTGAAGGTCTTATCGATACTTTTCTGAGCCTTTTCCATGAAAACAAAAGCA AGGATCTTCGGTCACTTGATGCAAATGGCTTCTGTCAGCTCATGCTTGAGCTGGAATATTTCGAGACCATATTAAATCCCTATCTCACACCCGATGCGAG GGAGTCTCTTAAGTCCTTACAAGGGGTGTTGCTGGAGAAAGCCACTGAGAATGTCACTGAAGCTGTTGAAAATCCAGGGCATCAACGCAGACCAACTCGT GGGAGTGAAGATGCACTTGCAGATGATAGGCTGCAAGGAATGACTGTGTCCCCAGATGACCTCATTGCTCTTGCTGAGCAGTGCAGCTCTGAGTTGCTTC AATCGGAGCTTGAGAGGACTCGTATTAATACAGCATGTTTTATCGAGTCGATTCCCCTGGACTCGGTACCAGAATCAGCTAAAGCTGCTTATGCCTATAG AGGATCAATGGATTCCCCCAGAAGCTACATGGATTCCCCCGGAAGAAACTATAGAGGCTCACAAGCAATGGGTTCCCCTGGTTTCTCTCGCCACAGACGT CGATAA
AA sequence Show only first row Show all	>Potri.002G068900.1 pacid=42777651 polypeptide=Potri.002G068900.1.p locus=Potri.002G068900 ID=Potri.002G068900.1.v4.1 annot-version=v4.1 MSSDSDDDDELLQMALKEQSQRDLNYQRPPSNQRKPVVNFVQQPRQPPPPQRPAPTKNMANQTKSRIAVEDDDDSEVEMLSISSGDEEVSKDRGGGGGAA ARGRGGRGAGGREEERGWDGEEPDCWKRVDEAELARRVRDMRESRTAPVAQKFERKPSALARKGLNTLQSFPRGMECIDPLGLGIIDNKSLRLITDSSES SPSKSDRDHLDNILREKLLYFSENFDAKLFLSRIHQDTSAAELEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSGTSH LYNCMQGVSSLANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSIGKGEYDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMNEFKGTLYK SMEDPQIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLLEKCTLDHEARMETLHNEMRERALSDAKWRQIQQNLNQSSDVDHSLMMGNIPPPVDS QPVDLSGEEVDALRGKYIRRLTAVLTHHIPAFWKVALSVFSGKFAKSSQVSAESNVNASATKSEEKVGDGRYSAHSLDEVAGMIRGTISAYETKVHNTFH DLEESNILQSYMSDAIKEISKACQAFEVKESAPPTAVMALRTLQAEITKIYIIRLCSWMRAMTEEISKEETWIPVSILERNKSPYTISFLPLAFRSVIAS AMDQISQMIQSLRSEAGRSEDMFALLQEIQESVRLAFLNCFLDFAGHLEQIGSELAQNKSSKESLHLQNGYSHESEEKLSSNLQGSVVDSHQQLLLVLSN IGFCKDELSYELFNKYKTIWLQSREKDEEGSDIQDLVMSFSGLEEKVLAQYTFAKANLIRTAAMNYLLNSGVQWGAAPAVKGVRDAAVELLHTLVAVHSE VFAGAKPLLDKTLGILVEGLIDTFLSLFHENKSKDLRSLDANGFCQLMLELEYFETILNPYLTPDARESLKSLQGVLLEKATENVTEAVENPGHQRRPTR GSEDALADDRLQGMTVSPDDLIALAEQCSSELLQSELERTRINTACFIESIPLDSVPESAKAAYAYRGSMDSPRSYMDSPGRNYRGSQAMGSPGFSRHRR R

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21170		SEC5B	Exocyst complex component SEC5...		Potri.002G068900 [exp]	0	1	Pt-SEC5.2
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	8.94	0.9156
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	12.40	0.8996
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	13.63	0.8763
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	13.96	0.9110
AT5G12370		SEC10	exocyst complex component sec1...		Potri.014G090100 [exp]	14.49	0.9085
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	14.69	0.9113
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	17.46	0.8764
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	18.52	0.9075
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	19.89	0.9072
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	23.06	0.9105

Compare expression of checked genes

Potri.002G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.