Plant FIBer expression Database

Potri.002G069100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43690 741 / 0 ubiquitin interaction motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G191300
[exp]
1056 / 0 AT1G43690 707 / 0.0 ubiquitin interaction motif-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005002
[exp]
827 / 0 AT1G43690 772 / 0.0 ubiquitin interaction motif-containing protein (.1)
Lus10024546
[exp]
819 / 0 AT1G43690 771 / 0.0 ubiquitin interaction motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13898 DUF4205 Domain of unknown function (DUF4205)
Representative CDS sequence
>Potri.002G069100.1 pacid=42776801 polypeptide=Potri.002G069100.1.p locus=Potri.002G069100 ID=Potri.002G069100.1.v4.1 annot-version=v4.1
ATGGCGGATCAAGAAGAAGAGGAGTTGAGAGTGGCTCTAAGAATGAGCATGCAAAACTCGCCTCCTGAACCTAAGCGAAGCAAGCCGAGAGACGCTGGAG
CTCCTGCGGCGTCACCAGAGGAATCGAGGCGGATGCAACGAGAGCTCATGGCAGCGGCCGCTGAGAAGCGGATGATCGCGACGAGAATTGCCTCCCCTTC
TCCTTCGTTGTCGCATTCGCCTTCTCCTTCTCCTTCACCTTCACCTTCACCTTCACCTTCACCTTCGAAAGCAACAATTGATAGAAATCCTGGTAAAAGT
GCGGACTGTGTTAGAAAGGAGGTGAATTTTGGTGCGAAGGAGGGGAATTCGGGACTGGAATTATCGAGTGAGGAAGTTAATCAGTTGTTTTCGATGGTGT
TTGGGAGCGGAGTTTCGAAGGACATTCTTGCTCAGTGGAGTAACCAGGGCATAAGGTTTAGTCCTGATCCAGAAACATCTATGGGCCTAGTGCAGCATGA
AGGCGGGCCCTGTGGCGTCTTAGCAACTATACAAGCATTTGTTCTCAAATACCTTCTTTTCTTTCCGAATGAAATAGGCAAAGTTACATCAAATGCGCCA
CAAAATTTAGGCCCTGGAAGATTGTCTAAAGGCCAATATGTTGCATCGGATAATTTTGGTTCTCTCACTGAAGATGCAAAAGCAAGAGCCCTGGTCAAAA
GCATGGGCGAGATATTGTTTATGTGTGGGGATAATAAAAGAGCTGTGATTGCCACTTTGAATGTTGTTGGCCTTGACACCAAGGGCTTTGCAAAGAACGA
GATTGTTGCAAAAGCACTTGAGGGTCTTTCAATTGAATCTGCCTTTGATTTGCAAAAAATTCTAAGAATCGAAACACATACATCACAAGCAAGTGCATTG
CAGAAGCTCCATAAGGCACTTCCTGTTTTCCAATCTCGTATGGGGGCACTACTGTTCCTTATTTCTGCATTACTGTCCCGGGGATTGGACTCCATTCAAT
CTGACAGGGACGATCCCAGCCTTCCCCTAGTCACTGCACCTTTTGGGCATGCTTCACAGGAAATTGTGAACCTTTTGCTCTGTGGACAGGCTGTCCCTAA
TGTATTTGACGGTAGGATGGACTTGGGTGGAGGCATGTTTCTAAAGGGCATATTCACGAGTGTGGAAGTTGGATTTCTCACTCTACTAGAATCCCTCAAT
TTTTGTAAGGTTGGCCAGCATCTAAAATGCCCTAAATGGCCAATATGGGTTGTAGGAAGTGAATCCCATTATACAGTTCTATTTGCTCTCGACACCACTG
TTCAAGATGAGAATGAGCTGGAAGAAAGGGAATCACAGATCCGGAGGGCATTTGATGCACAAGATCAGAGTGGCGGCGGTGGCTTTATCAGTGTTGAAGG
TTTCCATCAAGTCCTTAGGGAAGCAGGAATTAGACTTCCATCCGAGAAACTTGATCACCTTTGCAGCACTGGCTTTATTGTATGGAGTGAGTTCTGGCAG
GTTATTTTGGACTTGGACAAAAGTTTGGGAGGCCTTAAGGATTCAAGTGGGTTAATGGGTAAGAAGGTGTTTGATCTTTACCATTTTAATGGGATTGCAA
AATCTGATTTAAATGGAAGCCACACAACCTCTGGGGGTGAAACACCAGTTCAGAGACCTAGGCTCACAAAATTGAGGGTTTCAGTTCCACCAAGGTGGAC
TCCCGAGGAATTCATGGCAGATGTGGTAGTGACTTCTGGGCCTGTTGGGAACGAATCAAGTGGTAAAGACACTGAGGTGACAAAACCTGAGCCTTCCCAG
CATGCACCACTGGTGGACTGTATTAGAACACGCTGGTCGCGTGCAGTTTGCAATTGGGTGGGGGATCCGCCTAGTATAGTGTGA
AA sequence
>Potri.002G069100.1 pacid=42776801 polypeptide=Potri.002G069100.1.p locus=Potri.002G069100 ID=Potri.002G069100.1.v4.1 annot-version=v4.1
MADQEEEELRVALRMSMQNSPPEPKRSKPRDAGAPAASPEESRRMQRELMAAAAEKRMIATRIASPSPSLSHSPSPSPSPSPSPSPSPSKATIDRNPGKS
ADCVRKEVNFGAKEGNSGLELSSEEVNQLFSMVFGSGVSKDILAQWSNQGIRFSPDPETSMGLVQHEGGPCGVLATIQAFVLKYLLFFPNEIGKVTSNAP
QNLGPGRLSKGQYVASDNFGSLTEDAKARALVKSMGEILFMCGDNKRAVIATLNVVGLDTKGFAKNEIVAKALEGLSIESAFDLQKILRIETHTSQASAL
QKLHKALPVFQSRMGALLFLISALLSRGLDSIQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGGGMFLKGIFTSVEVGFLTLLESLN
FCKVGQHLKCPKWPIWVVGSESHYTVLFALDTTVQDENELEERESQIRRAFDAQDQSGGGGFISVEGFHQVLREAGIRLPSEKLDHLCSTGFIVWSEFWQ
VILDLDKSLGGLKDSSGLMGKKVFDLYHFNGIAKSDLNGSHTTSGGETPVQRPRLTKLRVSVPPRWTPEEFMADVVVTSGPVGNESSGKDTEVTKPEPSQ
HAPLVDCIRTRWSRAVCNWVGDPPSIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43690 ubiquitin interaction motif-co... Potri.002G069100
[exp]
0 1
AT4G17520 Hyaluronan / mRNA binding fami... Potri.003G081600
[exp]
12.44 0.6830
AT3G56150 ATTIF3C1, ATEIF... eukaryotic translation initiat... Potri.002G016900
[exp]
13.96 0.6687 Pt-TIF3.10
AT5G26830 Threonyl-tRNA synthetase (.1) Potri.008G145600
[exp]
14.83 0.6668 THRRS.1
AT3G09630 Ribosomal protein L4/L1 family... Potri.006G132450
[exp]
19.07 0.6734
AT4G13780 methionine--tRNA ligase, putat... Potri.017G057700
[exp]
28.61 0.6374
AT5G56680 SYNC1ARATH, SYN... EMBRYO DEFECTIVE 2755, Class I... Potri.006G153900
[exp]
31.46 0.6528 Pt-SYNC3.1
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Potri.018G114900
[exp]
31.74 0.6486
AT1G29880 glycyl-tRNA synthetase / glyci... Potri.003G162300
[exp]
47.32 0.6430 GLYRS.2
AT3G04680 CLPS3 CLP-similar protein 3 (.1.2) Potri.017G077200
[exp]
52.24 0.5969
AT5G22330 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.004G199100
[exp]
52.33 0.6420

Potri.002G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.