Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45340 296 / 1e-95 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 287 / 5e-92 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT1G19630 287 / 8e-92 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) AT3G19270 263 / 8e-83 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT2G29090 251 / 1e-77 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT5G05690 238 / 4e-73 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G13730 234 / 2e-71 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 227 / 2e-68 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT2G32440 219 / 1e-65 ATKAO2, CYP88A4, KAO2 ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, ent-kaurenoic acid hydroxylase 2 (.1.2) AT1G12740 208 / 1e-61 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033000 [exp] 318 / 2e-103 AT1G19630 607 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Potri.014G029100 [exp] 281 / 8e-90 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.004G235400 [exp] 278 / 2e-88 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.004G140900 [exp] 277 / 4e-88 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.001G242600 [exp] 274 / 1e-86 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.002G126100 [exp] 273 / 2e-86 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 271 / 8e-86 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G033900 [exp] 266 / 1e-83 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.008G067500 [exp] 233 / 4e-71 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018898 [exp] 775 / 0 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10028594 [exp] 763 / 0 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10024272 [exp] 298 / 3e-96 AT1G19630 592 / 0.0 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1) Lus10042652 [exp] 285 / 1e-90 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10021725 [exp] 280 / 1e-89 AT3G19270 633 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10035685 [exp] 260 / 1e-81 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10033308 [exp] 249 / 2e-77 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 248 / 7e-77 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10019858 [exp] 244 / 8e-75 AT3G19270 643 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10012675 [exp] 239 / 5e-73 AT3G19270 586 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G069600.1 pacid=42778566 polypeptide=Potri.002G069600.1.p locus=Potri.002G069600 ID=Potri.002G069600.1.v4.1 annot-version=v4.1 ATGGAACTGAGCATCTTGCTGGTCTTAATTCTCATAAGCATGCTTGTATTTTCAGCTTTCTTCTGGCTACAGTCACGGATTTCACCAAAAGAAATGGAGG TAATCCCAGGTAGCTTGGGTTGGCCAGTTGTTGGCGAAAGTTTCTCTTTCCTATCCGCGTTTTCTAGTGCAGCTGGTATATTCAGCTTCATGAAAAACAG GCAGCAGAGGTATGGAAAGGTTTTCAAGACTTTTGTTCTGGGAAGATTCACTGTATTCATGACTGGAAGAGAAGCAAGTAAAATCTTGTTGACAGGAAAA GATGGGATGGTGAGTTTAAACCTCTTTTATACAGGGAAGCAGGTGCTGGGCCCTACCAGCTTGCTCCAAACCACCGGAGAAGCTCACAAAAGGCTTCGGC GTCTGATCGGAGAACCCCTGTCAGTAGATGGCCTAAAAACGTATTTTCACTTCATTAACACAGTGGCTATGGAAACATTAGACCAATGGTCTGGACGAAC AGTGCTGGTCCTTGAAGAAGCTTCTACATTCACTCTCAAAGTAATCGGTAACATGATAATGAGCTTAGAACCCGCTGGAGAAGAGCAGGAAAAGTTTCGA TCAAATTTCAAAATCATTTCTTCTTCATTTGCATCACTGCCATTTAAAATCCCAGGAACAGCTTATCATAACGGTATCAAGGCTCGGGATAGGATGTACG ACATGTTAGACTCAATAATCGCAGGGAGGAGAAGTGGCAAAAGCATCCAACAAGATTTCCTAGAATCCCTGATAATGAAACATAGCAAAGCAGAAGGTGG AGAAGATCAGGAGGACAAACTGACAGACAAACAACTGAAGGATAATATATTAACTCTGCTAGTTGCAGGTCACGATACAACAACCGCTGCTCTCACCTGG CTTATGAAATTTCTCGAAGAAAATCCTGCAGTTTTAGAGAAACTCCGAGAAGAGCATATAAACATCCAATCAAAGAGAACGGATGGAGCCAGCCTCACAT GGTCCGAAGTTAACAACATGCCTTATACTAATAAAGTAATCAATGAAACTCTCAGAAGAGCCACAATATTACCTTGGTTTTCAAGAAAAGCTGCCCAGGA CTTTGAAATTGACGGATATGAAATCAAGAAAGGCTGGTCTATTAACTTGGATGTTGTTTCCATCCACCATGACCCTCAAGTTTTTCCCGACCCAGAAAAG TTTGACCCTTCCAGATTTGACGCACCCGTAAAGTCTTTCAGCTTTCTTGGATTTGGTAGTGGACCGCGGATGTGCCCTGGAATCAACCTTGCCAGACTAG AAATCTGTGTCTTCATACACCACCTGGTCATAAGATACAAGTGGAAACCTCTTGAGAAAGATGACTCTGTCCAGCCAACACTTGTGCGGATGCCAAGAAA CAAGTATCCAGTTATTGTTGAGCCACTATAA
AA sequence Show only first row Show all	>Potri.002G069600.1 pacid=42778566 polypeptide=Potri.002G069600.1.p locus=Potri.002G069600 ID=Potri.002G069600.1.v4.1 annot-version=v4.1 MELSILLVLILISMLVFSAFFWLQSRISPKEMEVIPGSLGWPVVGESFSFLSAFSSAAGIFSFMKNRQQRYGKVFKTFVLGRFTVFMTGREASKILLTGK DGMVSLNLFYTGKQVLGPTSLLQTTGEAHKRLRRLIGEPLSVDGLKTYFHFINTVAMETLDQWSGRTVLVLEEASTFTLKVIGNMIMSLEPAGEEQEKFR SNFKIISSSFASLPFKIPGTAYHNGIKARDRMYDMLDSIIAGRRSGKSIQQDFLESLIMKHSKAEGGEDQEDKLTDKQLKDNILTLLVAGHDTTTAALTW LMKFLEENPAVLEKLREEHINIQSKRTDGASLTWSEVNNMPYTNKVINETLRRATILPWFSRKAAQDFEIDGYEIKKGWSINLDVVSIHHDPQVFPDPEK FDPSRFDAPVKSFSFLGFGSGPRMCPGINLARLEICVFIHHLVIRYKWKPLEKDDSVQPTLVRMPRNKYPVIVEPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Potri.002G069600 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Potri.010G240700 [exp]	5.09	0.9957	Pt-GER2.16
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G212923 [exp]	8.24	0.9950
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000200 [exp]	9.05	0.9798	Pt-MALD1.2
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Potri.010G131300 [exp]	9.48	0.9948
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076100 [exp]	13.96	0.9947
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G076000 [exp]	14.49	0.9946
AT3G54040			PAR1 protein (.1)		Potri.009G039950 [exp]	14.96	0.9946
AT4G11410			NAD(P)-binding Rossmann-fold s...		Potri.001G103000 [exp]	15.81	0.9937
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075900 [exp]	17.20	0.9943
					Potri.014G081900 [exp]	22.73	0.9937

Compare expression of checked genes

Potri.002G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.