Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43710 791 / 0 EMB1075 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G65960 55 / 4e-08 GAD2 glutamate decarboxylase 2 (.1.2) AT4G28680 44 / 0.0001 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190500 [exp] 900 / 0 AT1G43710 811 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G144421 [exp] 56 / 4e-08 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 53 / 2e-07 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 53 / 3e-07 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028592 [exp] 821 / 0 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018897 [exp] 816 / 0 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.002G069800.2 pacid=42778161 polypeptide=Potri.002G069800.2.p locus=Potri.002G069800 ID=Potri.002G069800.2.v4.1 annot-version=v4.1 ATGGAAGCTGTCGATGCAGTGCCGGTTCACTTGAACGGGAAGGTTGAGATCGAGGACTTCGATCTGACGGTTGTGGAGGCGGAAAACGGAGATAAACAAA ATGGAAGAGAGATTGTGTTAGGGAGGAACGTGCACACCACTTGCCTCGAAGTCACGGAGCCCGAGGCTAACGATGAATCTACCGGAGATAAAGAAGCTTA TATGGCAAGCGTTTTGGCTCGCTACCGAAAGAACTTAATGGAAAGGACTAAACATCATTTAGGTTATCCTTATAATCTGGACTTCGACTATGGTGCTTTG GGGCAGTTGCAACATTTCTCCATCAACAATCTTGGTGACCCGTTCATTGAGAGTAACTATGGTGTACATTCAAGACAATTTGAAGTTGGTGTTCTTGACT GGTTTGCACGTCTTTGGGAGATTGAGAAAAGTGAATACTGGGGTTACATCACTAATTGTGGTACAGAAGGCAATCTTCATGGGATTCTAGTTGGGAGGGA AGTGTTTCCTGATGGAATTCTCTATGCATCTCGAGAGTCGCATTATTCTGTCTTCAAAGCTGCTCGAATGTATAGAATGGGTTGTGTGAAGGTTGATTGT CTGGTATCTGGCGAGATTGACTGTGCTGATTTTAAAGTTAAACTACTTGCTAACAAGGACAAACCAGCCATCATTAACGTTAATATAGGCACGACTGTCA AAGGAGCAGTTGATGATCTTGATCTTGTGATACAAACCCTTGAAGAAAGTGGATTTTCACAAGATCGATTCTATATTCACTGCGATGGAGCTTTATTTGG ACTTATGATGCCTTTTGTCAAACGTGCACCGAAGGTTACTTTCAAAAAGCCCATTGGAAGCGTTAGTGTCTCTGGCCACAAGTTTGTGGGATGCCCAATG CCATGTGGCGTGCAGATAACAAGGATGGAGCACATTAATGTCCTCTCAAGCAATGTTGAGTACCTTGCTTCAAGGGATGCTACAATCATGGGAAGCCGTA ATGGTCATGCCCCTATCTTCCTTTGGTACACGCTCAACAGAAAAGGATACAAAGGGTTCCAGAAAGAAGTGCAAAAGTGTCTCAGAAATGCTTATTACTT GAAGGACCGACTGCGTGATGCTGGGATTAGTGCTATGTTGAATGAGCTCAGCAGCACAGTTGTATTTGAGCGGCCTATAGATGAGGATTTTGTTCGCAGG TGGCAGCTAGCTTGCCAAGGGAATATTGCCCATGTTGTGGTTATGCCCAGCGTTACAATTGAGAAGCTCGATGATTTCGTGAATGAGTTAGTTGAAAAAC GTTCAACTTGGTATCAAGATGAAAAAGTTCGGCCTCCTTGTATTGCAGCGGATATAGGGAGTCAGAATTGCTCTTGTGATTTGCACAAGTGA
AA sequence Show only first row Show all	>Potri.002G069800.2 pacid=42778161 polypeptide=Potri.002G069800.2.p locus=Potri.002G069800 ID=Potri.002G069800.2.v4.1 annot-version=v4.1 MEAVDAVPVHLNGKVEIEDFDLTVVEAENGDKQNGREIVLGRNVHTTCLEVTEPEANDESTGDKEAYMASVLARYRKNLMERTKHHLGYPYNLDFDYGAL GQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKSEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMGCVKVDC LVSGEIDCADFKVKLLANKDKPAIINVNIGTTVKGAVDDLDLVIQTLEESGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPM PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAYYLKDRLRDAGISAMLNELSSTVVFERPIDEDFVRR WQLACQGNIAHVVVMPSVTIEKLDDFVNELVEKRSTWYQDEKVRPPCIAADIGSQNCSCDLHK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.002G069800 [exp]	0	1
AT1G75400			RING/U-box superfamily protein...		Potri.005G231500 [exp]	6.00	0.6670
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Potri.006G126300 [exp]	6.32	0.7065
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	7.48	0.7332
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	22.13	0.6974	ATCS.2
AT2G47115			unknown protein		Potri.014G115200 [exp]	22.22	0.7258
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.006G151800 [exp]	28.61	0.6859	NFC905,ATMSI4.4
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.007G088426 [exp]	40.62	0.6690
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Potri.008G049500 [exp]	41.58	0.6659
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.005G207300 [exp]	43.47	0.6345
AT3G17120			unknown protein		Potri.010G148200 [exp]	52.15	0.6158

Compare expression of checked genes

Potri.002G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.