Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42140 1422 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 1408 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 977 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 977 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 937 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 788 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 723 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 526 / 3e-170 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 522 / 5e-168 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 178 / 5e-48 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190000 [exp] 1877 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 1072 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 926 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 901 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 900 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 829 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 790 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 601 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 525 / 3e-168 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018904 [exp] 1684 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 1666 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 1581 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 1529 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 976 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10027273 [exp] 955 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 940 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10024157 [exp] 840 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 808 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10030999 [exp] 801 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 CL0390 [poplar] [flax] PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain CL0266 [poplar] [flax] PH PF16457 [poplar] [flax] PH_12 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.002G070300.1 pacid=42776792 polypeptide=Potri.002G070300.1.p locus=Potri.002G070300 ID=Potri.002G070300.1.v4.1 annot-version=v4.1 ATGGCAGATCTTGTTAGCTACGGTAATGCCGAACGTGACATCGAGCAGGCATTAATTGCTCTGAAGAAGGGTTCTCAACTTCTGAAATATGGTCGTAAGG GAAAGCCTAAGTTTTGTCCGTTTAGACTTTCTAATGATGAAACAACTTTGATCTGGATTTCAAGCAGTGGTGAAAGAAGTTTGAAGTTAGCCTCGGTCTC TAAAATTATTCCTGGACAAAGAACTGCTGTTTTTCAACGATATCTCCGCCCTGAAAAGGACTATTTATCATTTTCTCTTATATACAACAACGGGAAGCGG TCCCTCGATCTGATTTGCAAGGACAAAGTTGAGGCGGAGGTGTGGATTGCAGGCTTGAAGGCATTAATAATTTCTGGTCAAGGTGGGCGCTCCAAAATCG ATGGATGGAGTGATGGGGGCCTCTATCTTGATGATGGCAGAGATTTAACACCGAACAGTGCTAGTGACAGTTCTGTTAGTATTTCACGAGATATTAGCTC TCCAGAGGTTTCTGTCAATTTCAACCCAAATACTTCTCCAAAGAATTTTCAGCTTGAGAGTTCTCCACATTCTGATCGGTCACATGTAGCATCAGAAAAC ACAAATATGCAAGTCAAAGGTTCTGGTTCAGATGCTTTTAGAGTTAGTGTTTCCAGTGCTCCCAGCACTTCCAGTCATGGTTCTGCACCAGATGACTGTG ATGCCTTGGGTGATGTATACGTGTGGGGTGAGATTATATGTGATAATGCTGTCAAGGTCGGGGCTGATAAAAATGCCACATATTTGAGTACTAGAGCTGA TGTGCTTCTTCCCAGGCCCTTAGAATCTAATGTAGTTTTAGATGTACATCATATTGCCTGTGGATTCAGACATGCTGCAATGGTCACAAGGCAGGGTGAA GTTTTTACATGGGGTGAAGAATCTGGTGGAAGGCTTGGCCATGGCGTTGGGAAAGATGTTATTCAACCTCGCCTGGTTGAGTCTTTGGCAATGACTACTG TTGACTTTATAGCATGTGGAGAATTCCATACTTGTGCTGTTACAATGGCTGGGGAAATCTATACATGGGGAGATGGGATGCACTATGCGGGGCTACTTGG TCATGGCACTGATATTAGTCACTGGATACCCAAGAGAATCTCTGGTCCTCTTGAGGGTCTTCAAGTTGCTTCTGTAACATGTGGTCCGTGGCATACAGCC TTGGTGACGTCAACAGGGCAGCTTTTTACATTTGGGGATGGAACGTTTGGTGTCTTGGGCCACGGAAACAGAGAAAATATTGCCTATCCTAAAGAAGTTG AATCACTTGCTGGGTTGAGGACTATTGCTGTTGCTTGTGGTGTGTGGCATACCGCTGCTGTGGTGGAGGTTATTGTCACGCAGTCAAGTTCCAGTGTGTC ATCTGGAAAATTATTTACCTGGGGTGATGGAGACAAAAATCGTCTTGGACATGGAGACAAAGAACCTAGGCTTAAACCCACATGTGTGCCAGCATTAATT GACTTCAATTTTCACAAAATTGCTTGTGGACATAGTTTAACTGTTGGCTTGACCACATCGGGACATGTATTCACAATGGGCAGTACTGTTTATGGTCAAC TTGGAAATCCTTATGCTGATGGAAAGGTACCCTGCTTGGTAGAAGATAAGCTTTCTGGAGAATCTGTTGAAGAAATTGCTTGTGGTGCATATCATGTAGC AGTTTTGACATCCAGAAATGAGGTTTATACCTGGGGAAAGGGTGCCAATGGCAGGTTGGGTCATGGAGATGGTGAAGATCGAAAAACACCTACTCTAGTT GAAGCTTTGAAGGATAAACATGTGAAATATATTGCATGCGGTGCAAACTATTCTGCAGCTATATGCCTCCATAAATGGGTATCTGGTTCTGAGCAATCTC AATGTTCATCCTGCAGACAGGCTTTTGGGTTCACACGTAAAAGGCATAACTGCTATAACTGTGGACTTGTTCACTGCCATTCATGCAGTTCCAGAAAAGC AACAAGAGCAGCCTTAGCTCCTAATCCCAGCAAACCATATCGTGTCTGTGATTCCTGTTTTACCAAACTAAATAAGGTGTCGGATGCTAGTAACACTAAC AGAAGAAATGCTGGACCTCGGCTTTCAGGTGAAAACAAGGACAGGTTGGACAAGGCTGATTTAAGGTTGTCGAAGTTAACACTGCCTTCAAATCTGGATT TGATTAAGCAATTAGATAGCAAAGCAGCCAAACAAGGAAAGAAAGCTGATACGTTTTCTCTTGTTTGGTCTTCTCAAGCACCTTCTTTGTTACAGCTGAA AGATGTTGTTTTGTCTTCCACTATTGATCTGCGACCAAAGGTTCCCAAACCTGTTCTTACACCATCTGGAGTAAGTTCCAGATCTGTGTCGCCCTTCTCA AGGAGACCTAGCCCCCCACGTTCTGCAACGCCTGTTCCAACAACTTCAGGACTTTCCTTTTCCAAAAGTATAGCTGATAGTTTGAAGAAAACAAACGAAC TTTTGAATCAAGAAGTGCTTAAGCTGCGTACACAGGTTGAGAGCCTAAGACAGAGATGTGAATTCCAAGAATCAGAGCTTCAGAAATCCGCTAAGAAGGT ACAAGAAGCTATGGCAGTAGCCGCCGAAGAATCAGCTAAGTCTAAAGCTGCAAAAGATGTTATGAAGTCACTTACTGCACAGCTCAAGGATATGGCTGAG AGGCTGCCGCCTGGGGTCTATGATACTGAGAGCATGAGACCAGCTTACGTACCGAATGGTTTGGAGACAAATGGCATTCATTTTCCTGATGCAAATGGAA AACGGCATTCAAGATCTGATTCTATCAGTGGAACTTCCTTGGCTTCCCCGACAAGGGTTGACTCCATTTCAATAAATGGAACTCTAGGTATCACTCAGTC ACTCCGGGATTCACCTGGAGCCAATGGGAGGGATGACCATCCAGATGTGAGACTGTCCAATGGAGGGGCTCAGCCAAGTTGTAATAGTGTGTCAGAGGCT GTTGCTGGGAAGGAACCTCGGTCTCCTCAAGATGGTGAGAATGGTATGAAATCGAGGGATTCATCATTGGTTGCTAATGGTAATCATGTTGAGGCTGAGT GGATTGAACAGTATGAGCCTGGAGTGTATATCACTCTTGTTTCCCTGCGCGATGGAACTAGAGATCTCAAACGAGTGCGCTTCAGTCGGAGAAGATTTGG GGAGCACCAAGCAGAAACTTGGTGGTCGGAGAATCGTGAAAAAGTGTATGAGAAGTACAATGTTAGAGGTTCAGACAAATCATCAGTTAGTGGCCAGGCA GCTCGCAGATCAGAGGGAGGCATGTCCTCTGCTTCTCTACCTTAG
AA sequence Show only first row Show all	>Potri.002G070300.1 pacid=42776792 polypeptide=Potri.002G070300.1.p locus=Potri.002G070300 ID=Potri.002G070300.1.v4.1 annot-version=v4.1 MADLVSYGNAERDIEQALIALKKGSQLLKYGRKGKPKFCPFRLSNDETTLIWISSSGERSLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKR SLDLICKDKVEAEVWIAGLKALIISGQGGRSKIDGWSDGGLYLDDGRDLTPNSASDSSVSISRDISSPEVSVNFNPNTSPKNFQLESSPHSDRSHVASEN TNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYVWGEIICDNAVKVGADKNATYLSTRADVLLPRPLESNVVLDVHHIACGFRHAAMVTRQGE VFTWGEESGGRLGHGVGKDVIQPRLVESLAMTTVDFIACGEFHTCAVTMAGEIYTWGDGMHYAGLLGHGTDISHWIPKRISGPLEGLQVASVTCGPWHTA LVTSTGQLFTFGDGTFGVLGHGNRENIAYPKEVESLAGLRTIAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALI DFNFHKIACGHSLTVGLTTSGHVFTMGSTVYGQLGNPYADGKVPCLVEDKLSGESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDGEDRKTPTLV EALKDKHVKYIACGANYSAAICLHKWVSGSEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSRKATRAALAPNPSKPYRVCDSCFTKLNKVSDASNTN RRNAGPRLSGENKDRLDKADLRLSKLTLPSNLDLIKQLDSKAAKQGKKADTFSLVWSSQAPSLLQLKDVVLSSTIDLRPKVPKPVLTPSGVSSRSVSPFS RRPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVLKLRTQVESLRQRCEFQESELQKSAKKVQEAMAVAAEESAKSKAAKDVMKSLTAQLKDMAE RLPPGVYDTESMRPAYVPNGLETNGIHFPDANGKRHSRSDSISGTSLASPTRVDSISINGTLGITQSLRDSPGANGRDDHPDVRLSNGGAQPSCNSVSEA VAGKEPRSPQDGENGMKSRDSSLVANGNHVEAEWIEQYEPGVYITLVSLRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGSDKSSVSGQA ARRSEGGMSSASLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42140			Regulator of chromosome conden...		Potri.002G070300 [exp]	0	1
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	7.28	0.7611
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	8.12	0.7589
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.008G123300 [exp]	11.31	0.6835
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.006G106600 [exp]	15.29	0.7235
					Potri.009G005300 [exp]	24.00	0.7181
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	30.88	0.7159
AT3G14470			NB-ARC domain-containing disea...		Potri.012G122900 [exp]	31.93	0.6950
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	32.46	0.6590	POL.2
AT3G12590			unknown protein		Potri.008G052700 [exp]	33.16	0.7181
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	34.29	0.6106

Compare expression of checked genes

Potri.002G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.