Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18710 288 / 6e-94 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G09800 265 / 4e-85 ARM repeat superfamily protein (.1) AT5G64660 263 / 5e-84 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G49810 126 / 6e-32 ARM repeat superfamily protein (.1) AT5G65920 123 / 4e-31 ARM repeat superfamily protein (.1) AT1G66160 123 / 4e-31 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT1G23030 114 / 2e-27 PUB11 ARM repeat superfamily protein (.1) AT3G54850 111 / 3e-26 ATPUB14 plant U-box 14 (.1) AT3G46510 108 / 3e-25 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G35930 103 / 4e-24 PUB23 plant U-box 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G189800 [exp] 611 / 0 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.007G110600 [exp] 318 / 1e-105 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 307 / 2e-101 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 125 / 3e-31 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 124 / 1e-30 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.016G069400 [exp] 119 / 7e-30 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.012G042600 [exp] 118 / 3e-29 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 114 / 8e-28 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 114 / 1e-27 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042798 [exp] 407 / 2e-140 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10029771 [exp] 407 / 2e-140 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10005810 [exp] 315 / 1e-104 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 198 / 2e-60 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10010598 [exp] 114 / 6e-28 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10037970 [exp] 115 / 9e-28 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10034113 [exp] 114 / 5e-27 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10043471 [exp] 113 / 8e-27 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016565 [exp] 112 / 2e-26 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 109 / 2e-25 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.002G070500.1 pacid=42779856 polypeptide=Potri.002G070500.1.p locus=Potri.002G070500 ID=Potri.002G070500.1.v4.1 annot-version=v4.1 ATGGGGAGAGACGAACTCTTCCTAACTGTACCCAGCCTCTTTCGCTGTCCGATCTCTCTCGACGTAATGAAGTCTCCCGTAAGTCTCTGCACCGGCGTCA CATACGATCGCTCCAGTATTCAACATTGGCTCGACTCCGGTCACGACACCTGTCCCGCCACCATGCAAATCCTCTCCTCCAAGGACTTTGTTCCTAACCT CACTCTCCACCGCCTCATCAACCTCTGGACCACCACAGCCGCCACCAAATCCTCTGCTCTCGCTCCGGCAGTTTCCGAAGAGAAAGTTAGGGTTTGGATT GAAGAAATCAAGAGCGGAAAGATAGAGAGGTGTTTGGATTCGATTGTAGAGTTTGTTAGTTGTGGAGAGGTGAGCCGAAGGTTTTTGGTCAGTTTTGATG GTTTTTTGGAGGCGATCGTGGGTGTTTTGAACACAAATTGCGTGCAAATTCGTGTTCTGGAGTCGGTTATCAGGGTCTTAAGTTCACTTTTGCTTGAAAA TGGAGTCAATGAGAAATTGCACAAATTAGTCTTCACATCAAATTCGAATTGCCTGCCTTCCTTTATTTCTGTTTTGCGAAACGGAAGTTTGGAGTACAAT ATCGCATGCGTCACCGTTTTGGAGTCAATTACAATAAACAACCAATCAAAACAGCTCGTTGCAGGTACACAGGACGTCTTGCCGGTTCTATTACAACTTC TCAAAACTGACAACGACCATCAGGATTTAAACGAAGTGGTCCTGTCGTTTTTGATTTCGGTGTCTATAACTCTGTCAATCAAGACTCGGCTAGTTCAACT CGGACTGGTTGAGGTTCTATCGAGCATGCTGTTGAGCCAAAACGCTGCCGTTTCTGTCGTGGAAAAGTCACTGAAGGCATTGTCAATGATTTGTACGCGT GCGGATGGACGGTCAGCGATAAGCGTTGACCCGACATGCGCAGGGGCGATAGTGGAGAGATTAATGAAGGTCTCAAAAACGGCAACGGAGGATGCCGTGG TGGTGCTGTGGAGCATGTGTTGTCTGTTTAGGGATGAGAAGGTGCTGGAGAGAGTGGTCAGGAGCAATGGAGTGACAAAAGTCTTGTTGATTATGCAGAG TGAAGTAGGGGAAGGGAATGTAAGGAGGATGTGTGGTGACTTGATCAAGGTTTTAAGATTTGGCTGTAAAAATGGTGGCGGCCTTGGTGGTGCGGTGAGT TACGAGACCAAAACTACTCATATCATGCCTTGTTAA
AA sequence Show only first row Show all	>Potri.002G070500.1 pacid=42779856 polypeptide=Potri.002G070500.1.p locus=Potri.002G070500 ID=Potri.002G070500.1.v4.1 annot-version=v4.1 MGRDELFLTVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLDSGHDTCPATMQILSSKDFVPNLTLHRLINLWTTTAATKSSALAPAVSEEKVRVWI EEIKSGKIERCLDSIVEFVSCGEVSRRFLVSFDGFLEAIVGVLNTNCVQIRVLESVIRVLSSLLLENGVNEKLHKLVFTSNSNCLPSFISVLRNGSLEYN IACVTVLESITINNQSKQLVAGTQDVLPVLLQLLKTDNDHQDLNEVVLSFLISVSITLSIKTRLVQLGLVEVLSSMLLSQNAAVSVVEKSLKALSMICTR ADGRSAISVDPTCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVLERVVRSNGVTKVLLIMQSEVGEGNVRRMCGDLIKVLRFGCKNGGGLGGAVS YETKTTHIMPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	0	1
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036600 [exp]	1.73	0.9591
AT3G23440		EDA6, MEE37	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G068800 [exp]	2.44	0.9429
AT2G16900			Arabidopsis phospholipase-like...		Potri.004G176100 [exp]	2.64	0.9217
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	4.89	0.9212
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	5.00	0.9297	ERF6
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054900 [exp]	5.47	0.9374	HSP70.7
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	9.00	0.9172
AT3G14470			NB-ARC domain-containing disea...		Potri.017G133600 [exp]	10.09	0.9044
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.007G113000 [exp]	12.64	0.9160
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.009G057900 [exp]	12.80	0.8826

Compare expression of checked genes

Potri.002G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.