Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21340 151 / 3e-44 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 134 / 1e-37 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 119 / 2e-31 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 115 / 1e-30 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT4G24060 116 / 4e-30 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 112 / 6e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G61850 111 / 9e-29 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT5G60850 112 / 1e-28 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G55370 111 / 4e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT2G37590 110 / 4e-28 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188900 [exp] 516 / 0 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G202500 [exp] 162 / 5e-48 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 159 / 9e-47 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 119 / 1e-31 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 115 / 4e-30 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 114 / 4e-30 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 115 / 5e-30 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.008G055100 [exp] 115 / 1e-29 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.015G048300 [exp] 112 / 7e-29 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029767 [exp] 140 / 6e-40 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10013586 [exp] 134 / 4e-37 AT3G52440 137 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 124 / 6e-34 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 114 / 4e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10025707 [exp] 114 / 5e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10014001 [exp] 110 / 2e-28 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 109 / 6e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10015425 [exp] 109 / 7e-28 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10035955 [exp] 109 / 2e-27 AT5G65590 196 / 4e-60 Dof-type zinc finger DNA-binding family protein (.1) Lus10017882 [exp] 107 / 2e-27 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G070700.1 pacid=42778825 polypeptide=Potri.002G070700.1.p locus=Potri.002G070700 ID=Potri.002G070700.1.v4.1 annot-version=v4.1 ATGTACTCTGCTAGTGACCAGATGATGTTTCAATGCCCTCCTAGGCCATTTCCAATGGAGAGAAAATGGAAATCCAACATCGAAGTTGCTCCAAATTGCC CTCGTTGTGCTTCTCCGAACACGAAATTCTGCTACTACAACAACTACAGCTTGTCACAGCCTAGGTATTTTTGTAAGGGTTGTAGAAGGTATTGGACTAA AGGAGGGTCGCTAAGAAATGTTCCTGCAGGTGGTGGTTGTCGCAAGTATCGCAGAGCGAGGTCCTCTAAGATCTCGCAGAATGAACGTGCTGCTGTTTCG CTTGATTATAGTAGGGCTAATGAGACATTAGCTTGTTCCTCGAATAAAGACTCAGTGGCTCAACAAGATGGAGCCAATGGGTCCGATATTGATCTAGCTG CTGTTTTCTCTAAGTTCTTGAATCAAGACTTGAGTTATGGGCCCGAGTTTATTGGTGAAGAATTGCGTGATGAGGGCAGTGAGTTGGTTAATATATCGAA TTCTTCAACCCCAATATCAGACAGCTACCAAAATGATCCGATGATGGAAAGCCTGAAGCGGTCTGATCTGACCCAAGAATCCAATTTACTTGAAGGGAGA TCTCAGGTGCTTGTGGGAGAGAAGCAACAATTTGAAGAGGATCAGAGATTTCAAGAACTCATCGAAAGTCAAGACATGAATGCATTTGGGTTGCAAAATT TACTGATCGATGAAATTGTGCAAGATGCTTTGTGGTCTGATGATGCAACCTTGCCTCATGTTCCTAATTGGCAACCCATGGTACAATTGCAAGATTTTGA TTCATTTTCAGTGGATGATCGTCTAAAGATTTCAGCCAATTTTACCAGCGACGATAATTGGAGTTCTTTTGATCTCTCGGGGTTTGAGGTTTTTCCAAGA CCTTGA
AA sequence Show only first row Show all	>Potri.002G070700.1 pacid=42778825 polypeptide=Potri.002G070700.1.p locus=Potri.002G070700 ID=Potri.002G070700.1.v4.1 annot-version=v4.1 MYSASDQMMFQCPPRPFPMERKWKSNIEVAPNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPAGGGCRKYRRARSSKISQNERAAVS LDYSRANETLACSSNKDSVAQQDGANGSDIDLAAVFSKFLNQDLSYGPEFIGEELRDEGSELVNISNSSTPISDSYQNDPMMESLKRSDLTQESNLLEGR SQVLVGEKQQFEEDQRFQELIESQDMNAFGLQNLLIDEIVQDALWSDDATLPHVPNWQPMVQLQDFDSFSVDDRLKISANFTSDDNWSSFDLSGFEVFPR P

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	1.73	0.9065
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	2.44	0.8799
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	7.74	0.8563
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	9.79	0.7801
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	11.48	0.8491
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	17.66	0.8151
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.006G064400 [exp]	20.59	0.8652
AT5G12900			unknown protein		Potri.003G210200 [exp]	26.15	0.7311
					Potri.002G055566 [exp]	27.74	0.7768
AT3G16460		JAL34	jacalin-related lectin 34, Man...		Potri.017G010900 [exp]	35.00	0.7259

Compare expression of checked genes

Potri.002G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.