Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 1004 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 1003 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 880 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 860 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 777 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 630 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 612 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 593 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 561 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 556 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188700 [exp] 1824 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G175700 [exp] 993 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 983 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 898 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 884 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 866 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 861 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G198000 [exp] 797 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 773 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028612 [exp] 1316 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 1294 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011756 [exp] 967 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 931 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 850 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 786 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 785 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10038930 [exp] 556 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027951 [exp] 545 / 4e-177 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 545 / 4e-177 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G070900.1 pacid=42778414 polypeptide=Potri.002G070900.1.p locus=Potri.002G070900 ID=Potri.002G070900.1.v4.1 annot-version=v4.1 ATGATGTCAAGCAACGCAATCACCATTTTTCTCTTGTTTCTTAACATCTCTATCTTTCCAGCCATCTCTGCCTTGAACCAAGAAGGTCATTGTCTACTTT CATGGCTTTCAACCTTTAATTCTTCTCTTTCAGCTACTTTCTTCTCGACATGGGATCCAAGCCACAAAAATCCATGCAAATGGGATTATGTTAGATGTTC TAGTAATGGTTTTGTCTCGGGAATAACAATCACTTCCATCAACCTTCCTACCAGCTTCCCTACCCAGCTACTCTCCTTTAACCATCTCACAACTCTCGTC CTTTCAAATGCAAATCTCACTGGAGAAATTCCACGGTCGATAGGAAACCTGTCATCGCTGAGCACCTTAGACCTCAGTTTCAATTCTTTGACTGGAGACA TCCCAGCAGAAATTGGGAGACTATCTCAATTGAAGTTACTTGCTCTGAATACAAATTCATTACATGGTGAGATTCCAAAAGAAATAGGAAACTGTTCAAG GCTTAGACAGCTGGAACTGTTTGATAACCAGCTATCCGGAAAGATTCCTGCAGAAATAGGCCAATTGTTAGCTTTGAAGACCTTTCGAGCAGGTGGTAAC CCGGGAATTTATGGCGAAATCCCAATGCAGATATCCAACTGCAAAGAACTACTCTTTTTGGGTCTTGCAGATACTGGGATTTCAGGACAGATTCCAAGTA TTTTAGGAGAACTGAAGCATCTTGAGACTCTTTCGGTCTACACAGCTAAACTTACAGGCAGCATTCCAGCAGATATTGGCAACTGCTCAGCGATGGAGCA TCTCTATCTGTACGGAAACCAAATTTCAGGCAGGATTCCTGATGAATTGGCTTTGTTGACAAATCTCAAGAGGTTGTTGTTATGGCAGAACAATCTAACC GGGAGCATTCCAGATGCTCTAGGCAATTGTTTAGCTTTGGAAGTTATTGATCTCTCGATGAATTCTCTAAGTGGTCAGATTCCTGGGTCTCTTGCCAATT TGGCTGCATTGGAGGAGCTTCTTTTATCAGACAATTACCTTACAGGAGAAATCCCGCCTTTTGTTGGCAACTTTTTTGGCCTGAAGCAGCTTGAACTGGA TAACAACAGATTCACTGGCGAGATTCCACCTGCCATTGGCCAACTGAAGGAGCTTTTAATTTTTTTTGCGTGGCAGAACCAGCTCCATGGAAGCATACCT GCTGAACTAGCCAAATGTGAGAAACTTCAAGCATTGGATCTTTCACACAATTTCCTTACTGGCTCAATTCCACATTCTCTGTTCCATCTCAAGAACTTAA GTCAATTGCTTCTGATATCAAATGGATTTTCAGGTGAAATCCCACCAGATATTGGTAATTGCATTGGTTTGATCCGTTTACGATTAGGATCAAACAACTT TACTGGTCAACTTCCCCCAGAAATAGGTCTCTTGCATAAATTGAGCTTCCTCGAATTGTCAGATAATCAATTTACTGGAGAAATCCCTCTAGAGATTGGT AACTGCACTCAACTAGAAATGGTTGATTTGCACAGCAATAGGCTCCATGGAACCATTCCCACATCTGTTGAGTTTCTTGTTAGTCTAAACGTATTAGACC TTTCCAAGAACTCTATAGCAGGATCCGTACCTGATAACTTAGGCATGCTTACATCCTTAAACAAACTGGTTATCAGTGAAAACTACATTACTGGTTCTAT CCCGAAGTCACTTGGCCTGTGTAGGGATCTGCAGCTGTTAGATATGAGCAGCAACAGACTCACTGGTTCAATCCCAGATGAGATAGGTGGATTGCAAGGG CTAGACATCCTCTTGAATTTGAGTAGGAATTCTCTAACGGGCTCTATTCCTGAAAGCTTCGCAAATCTCTCAAATCTTGCCAACCTAGATCTCTCGCACA ACATGCTCACAGGAACGCTGACAGTCTTAGGCAGTCTTGACAATCTTGTATCTCTCAATGTCTCGCACAACAACTTTTCAGGTTTGCTTCCTGATACCAA GCTCTTCCATGATCTCCCTGCCTCCGCATATGCTGGCAATCAAGAGCTCTGCATTAACAGAAACAAGTGTCACATGAATGGAAGTGACCATGGCAAGAAC TCCACCAGAAACCTTGTTGTGTGCACTCTTCTCAGCGTAACAGTGACCTTGTTGATTGTGTTTCTTGGAGGACTTCTTTTTACCAGAATTCGTGGAGCTG CTTTTGGGAGGAAAGATGAAGAAGACAATTTGGAGTGGGATATCACCCCATTTCAAAAGCTTAACTTCTCGGTGAATGATATTGTGACAAAGCTCTCAGA TTCAAACATTGTTGGGAAGGGTGTTTCAGGCATGGTTTATCGTGTCGAGACTCCAATGAAACAGGTCATTGCTGTGAAAAAGTTGTGGCCGCTGAAGAAT GGTGAGGTTCCAGAGAGAGACTTGTTTTCTGCCGAGGTTAGAGCTCTTGGATCAATACGGCATAAAAATATAGTGAGGCTTCTAGGATGTTGTAACAACG GAAAAACTAGGTTGCTCTTATTTGACTACATCAGCATGGGGAGTTTGGCTGGATTACTCCATGAGAAGGTATTCTTGGATTGGGATGCTAGATACAACAT AATATTGGGGGCAGCTCATGGCTTGGCTTATCTTCATCATGATTGTATTCCTCCAATTGTACATCGTGACATCAAGACTAATAACATCTTGGTTGGACCA CAGTTTGAAGCTTTTCTTGCAGATTTTGGGCTGGCAAAGCTTGTTGATTCTGAAGAATGTTCAAGAGTTTCTAATGTAGTTGCAGGTTCTTTTGGGTACA TTGCCCCAGAATATGGATACTGTTTGAGAATCACAGAGAAAAGTGATGTGTACAGCTATGGTGTAGTGCTCCTAGAGGTTTTAACAGGGAAAGAACCTAC TGATGACCGGATCCCTGAAGGTGTCCACATTGTCACGTGGGTTAGCAAGGCACTCCGAGAAAGAAGAACAGAATTGACAACAATCCTAGACCCGCAACTT CTTTTGCGATCAGGTACACAACTCCAAGAAATGCTTCAGGTGCTTGGGGTGGCCCTCTTGTGTGTGAACCCTTCACCAGAAGAACGACCCACCATGAAAG ATGTAACAGCGATGTTGAAGGAGATCAGACATGTAAATGAGGATTTTGAAAAACCAAACTATCGTGGCATGGAAGCGACTTCCAATCCAAAAGCAGCAGT TCACTCCTCTAGTTTCTCCAGATCATCTGAACCTCTAATTAGATCACCTTCATAA
AA sequence Show only first row Show all	>Potri.002G070900.1 pacid=42778414 polypeptide=Potri.002G070900.1.p locus=Potri.002G070900 ID=Potri.002G070900.1.v4.1 annot-version=v4.1 MMSSNAITIFLLFLNISIFPAISALNQEGHCLLSWLSTFNSSLSATFFSTWDPSHKNPCKWDYVRCSSNGFVSGITITSINLPTSFPTQLLSFNHLTTLV LSNANLTGEIPRSIGNLSSLSTLDLSFNSLTGDIPAEIGRLSQLKLLALNTNSLHGEIPKEIGNCSRLRQLELFDNQLSGKIPAEIGQLLALKTFRAGGN PGIYGEIPMQISNCKELLFLGLADTGISGQIPSILGELKHLETLSVYTAKLTGSIPADIGNCSAMEHLYLYGNQISGRIPDELALLTNLKRLLLWQNNLT GSIPDALGNCLALEVIDLSMNSLSGQIPGSLANLAALEELLLSDNYLTGEIPPFVGNFFGLKQLELDNNRFTGEIPPAIGQLKELLIFFAWQNQLHGSIP AELAKCEKLQALDLSHNFLTGSIPHSLFHLKNLSQLLLISNGFSGEIPPDIGNCIGLIRLRLGSNNFTGQLPPEIGLLHKLSFLELSDNQFTGEIPLEIG NCTQLEMVDLHSNRLHGTIPTSVEFLVSLNVLDLSKNSIAGSVPDNLGMLTSLNKLVISENYITGSIPKSLGLCRDLQLLDMSSNRLTGSIPDEIGGLQG LDILLNLSRNSLTGSIPESFANLSNLANLDLSHNMLTGTLTVLGSLDNLVSLNVSHNNFSGLLPDTKLFHDLPASAYAGNQELCINRNKCHMNGSDHGKN STRNLVVCTLLSVTVTLLIVFLGGLLFTRIRGAAFGRKDEEDNLEWDITPFQKLNFSVNDIVTKLSDSNIVGKGVSGMVYRVETPMKQVIAVKKLWPLKN GEVPERDLFSAEVRALGSIRHKNIVRLLGCCNNGKTRLLLFDYISMGSLAGLLHEKVFLDWDARYNIILGAAHGLAYLHHDCIPPIVHRDIKTNNILVGP QFEAFLADFGLAKLVDSEECSRVSNVVAGSFGYIAPEYGYCLRITEKSDVYSYGVVLLEVLTGKEPTDDRIPEGVHIVTWVSKALRERRTELTTILDPQL LLRSGTQLQEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHVNEDFEKPNYRGMEATSNPKAAVHSSSFSRSSEPLIRSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24240			Leucine-rich repeat receptor-l...		Potri.002G070900 [exp]	0	1
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Potri.005G164200 [exp]	3.16	0.9133
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	6.48	0.9109
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	8.12	0.9116
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	9.59	0.9088
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	11.53	0.9033
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	12.96	0.8947
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	13.60	0.9070
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	13.74	0.8806
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	13.85	0.9053
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	15.87	0.8974

Compare expression of checked genes

Potri.002G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.