Plant FIBer expression Database

Potri.002G071000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21350 350 / 9e-123 Thioredoxin superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018916
[exp]
335 / 2e-116 AT1G21350 315 / 8e-109 Thioredoxin superfamily protein (.1.2.3)
Lus10028617
[exp]
276 / 4e-94 AT1G21350 275 / 1e-94 Thioredoxin superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF00578 AhpC-TSA AhpC/TSA family
Representative CDS sequence
>Potri.002G071000.10 pacid=42779921 polypeptide=Potri.002G071000.10.p locus=Potri.002G071000 ID=Potri.002G071000.10.v4.1 annot-version=v4.1
ATGGCTACCACTTGTACTGCTCTGAGTGTGGCGTCCATGGCAGGAGGCGCACGCGCATGCTTATTTTCTCATCTCCCCCGCACGCTAGCAAAAACCAATA
TTAGTACAAGTATTGTTTCCTCAAAATGGATTTATTCCTCGAAAATGGGTCTTAATCCTCTGCAACGCGAGTGCGCGATAAACAAAACTGTACCTACTAG
GAAGCTTCAAGTTCGTGCTGCTAGAACCGAGTCACAAGGTGTCTCCTTAGGGTTTAGAGCTCCCAGTTTCGAGTTGCCAGAGCCTCTAACTGGGAAAACT
TGGAAACTTGAAGATTTTGAGCCGTATCCTGCTTTACTGGTTATGTTTATCTGCAATCACTGCCCATTCGTTAAACACTTGAAGAAGGATATAGTGAAGC
TCACAAATTTTTATATGAAGAAAGGACTTGCAGTTGTAGCTATATCTTCAAACTCAGTAGCTACTCATCCACAGGATGGACCAGAGTTGATGGCAGAGGA
CGCCAAAATACTTAATTACCCTTTCCCTTATTTATATGATGAGTTGCAAGAAGTAGCTCGAGACTTTGGAGCAGTTTGTACACCAGAGTTCTTCCTATTT
AAAAAGGATGGACGGAGACCATTTGAGCTGGTGTATCATGGCCAATATGATGATTCCAGACCCAGTAATAATGTGCCTATCACTGGAAGGGACTTAAGTC
TTGCAATTGACTGTGTTCTTAGTGGCCAACCAGTATCACCAGTTCAGAAACCCAGTGTTGGATGCGGCGTAAAATGGCATCCTGGGGCGAAGTAA
AA sequence
>Potri.002G071000.10 pacid=42779921 polypeptide=Potri.002G071000.10.p locus=Potri.002G071000 ID=Potri.002G071000.10.v4.1 annot-version=v4.1
MATTCTALSVASMAGGARACLFSHLPRTLAKTNISTSIVSSKWIYSSKMGLNPLQRECAINKTVPTRKLQVRAARTESQGVSLGFRAPSFELPEPLTGKT
WKLEDFEPYPALLVMFICNHCPFVKHLKKDIVKLTNFYMKKGLAVVAISSNSVATHPQDGPELMAEDAKILNYPFPYLYDELQEVARDFGAVCTPEFFLF
KKDGRRPFELVYHGQYDDSRPSNNVPITGRDLSLAIDCVLSGQPVSPVQKPSVGCGVKWHPGAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G21350 Thioredoxin superfamily protei... Potri.002G071000
[exp]
0 1
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.016G072100
[exp]
2.82 0.9815 Pt-BAS1.2,PtrcPrx2-cysA
AT1G55670 PSAG photosystem I subunit G (.1) Potri.001G471900
[exp]
6.16 0.9719 Pt-PSAG.1
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
8.71 0.9691
AT5G40950 RPL27 ribosomal protein large subuni... Potri.001G329500
[exp]
10.24 0.9693 Pt-RPL27.5
AT2G30570 PSBW photosystem II reaction center... Potri.005G218800
[exp]
12.72 0.9688
AT1G29070 Ribosomal protein L34 (.1) Potri.011G064800
[exp]
13.22 0.9686
AT4G12800 PSAL photosystem I subunit l (.1) Potri.014G175600
[exp]
14.31 0.9688 PSAL.2
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.002G047100
[exp]
14.96 0.9678
AT1G60950 FED A, ATFD2, F... FERREDOXIN 2, 2Fe-2S ferredoxi... Potri.004G218400
[exp]
15.29 0.9641 PETF.3
AT4G15510 Photosystem II reaction center... Potri.005G010700
[exp]
15.49 0.9655

Potri.002G071000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.