Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21360 253 / 9e-86 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 251 / 8e-85 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) AT2G33470 130 / 1e-37 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT2G34690 49 / 7e-07 ACD11 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188600 [exp] 400 / 6e-144 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.010G069600 [exp] 140 / 2e-41 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 129 / 3e-37 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 122 / 8e-35 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.006G051800 [exp] 54 / 8e-09 AT2G34690 305 / 9e-107 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Potri.016G055300 [exp] 46 / 6e-06 AT2G34690 295 / 1e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018917 [exp] 290 / 3e-100 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 268 / 3e-91 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10042793 [exp] 273 / 5e-89 AT1G21370 486 / 2e-170 unknown protein Lus10029765 [exp] 251 / 2e-85 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10003626 [exp] 130 / 3e-37 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10021169 [exp] 128 / 1e-36 AT2G33470 334 / 3e-118 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10011806 [exp] 124 / 3e-35 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 98 / 4e-25 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10023267 [exp] 42 / 0.0002 AT2G34690 293 / 5e-102 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1) Lus10038537 [exp] 42 / 0.0002 AT2G34690 279 / 5e-94 ACCELERATED CELL DEATH 11, Glycolipid transfer protein (GLTP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [poplar] [flax] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Potri.002G071100.1 pacid=42778017 polypeptide=Potri.002G071100.1.p locus=Potri.002G071100 ID=Potri.002G071100.1.v4.1 annot-version=v4.1 ATGAAAAGGACCAGAGAAATAGAGAAGGGATCAGAGATCAAGTCTGCAATTGAAGAACTTTCGATGCTGATCAAACTCAAGCCTACAGGTGACAATCACG ATAGGACTACTGTTCATATACCCACAAGGCCTTTTATGTATGTCTGCAACCTTGTTATTCAGGTTCTTGATAAGATAGGCCCAACAATGACAGTTTTGAG ACAAGATATTGATCAGAATATTCAGAGATTGAAGATGCTATGTGATTCTGATCCTTCAATGTACTCCAATTTGGTTGAGATTTTAAAGAAAGAGGCCGAT GAAGGCGGTGCAAGAAAGGGTGCCAGCTGCAGTAAAGCCTCTGTTTGGCTTGCCAGATCCTTGGATTTTACGGTTGCTTTGTTAGAAAGGTTAGTGGCGG ATCCTGGTCAGGAAATGGAGAAACTCGTGGAAGAATCTTACAACATCACTTTAAAGCCATGGCATGGTTGGATTTCATCAGCCGCTTATAAAGTAGCTCT TAAATTAGTACCTGATAATAAAACCTTGATTGATCTGCTCATGCCAAAAGACGAAACCTACGACACCCTTAAAGAGGATGTGCAAACATTGATCTCACTA CTTGTGCCTTTTTTAGAAGAGATCCACTCTGTTCTGATATTGTACGGGTTGGATAGGTTGAAGTCCACTTAA
AA sequence Show only first row Show all	>Potri.002G071100.1 pacid=42778017 polypeptide=Potri.002G071100.1.p locus=Potri.002G071100 ID=Potri.002G071100.1.v4.1 annot-version=v4.1 MKRTREIEKGSEIKSAIEELSMLIKLKPTGDNHDRTTVHIPTRPFMYVCNLVIQVLDKIGPTMTVLRQDIDQNIQRLKMLCDSDPSMYSNLVEILKKEAD EGGARKGASCSKASVWLARSLDFTVALLERLVADPGQEMEKLVEESYNITLKPWHGWISSAAYKVALKLVPDNKTLIDLLMPKDETYDTLKEDVQTLISL LVPFLEEIHSVLILYGLDRLKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	0	1
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	4.69	0.8015
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	8.94	0.7500
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	13.41	0.7243
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	16.00	0.7511
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	17.20	0.7700
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	17.66	0.7969
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136601 [exp]	26.15	0.7507
					Potri.002G068501 [exp]	27.29	0.7615
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.002G070000 [exp]	27.65	0.6546
AT5G49525			unknown protein		Potri.008G102400 [exp]	28.35	0.6621

Compare expression of checked genes

Potri.002G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.