Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VPS45.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77140 996 / 0 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT1G02010 139 / 8e-35 SEC1A secretory 1A (.1.2) AT1G12360 121 / 8e-29 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 118 / 1e-27 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT2G17980 84 / 7e-17 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT3G54860 57 / 2e-08 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G188000 [exp] 1081 / 0 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.014G069300 [exp] 120 / 2e-28 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.001G116900 [exp] 120 / 2e-28 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.003G115800 [exp] 117 / 1e-27 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.004G204400 [exp] 72 / 6e-13 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 65 / 9e-11 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.010G226600 [exp] 59 / 6e-09 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 56 / 8e-08 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018921 [exp] 1013 / 0 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 1011 / 0 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10015870 [exp] 119 / 5e-28 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 113 / 4e-26 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10024558 [exp] 110 / 3e-25 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10032196 [exp] 106 / 8e-24 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10023936 [exp] 76 / 3e-14 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 75 / 7e-14 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10037969 [exp] 46 / 8e-05 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10038698 [exp] 44 / 0.0004 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.002G071600.1 pacid=42778035 polypeptide=Potri.002G071600.1.p locus=Potri.002G071600 ID=Potri.002G071600.1.v4.1 annot-version=v4.1 ATGGTGCTGGTATCTGCTGCACGTGATTACATAAACCGGTTGTTGCAGGACATCTCCGGCATGAAGGTTCTCATTCTCGATTCCCAAACGGTTACCATTG TAAGTGTTGTGTATTCACAAACAGAGTTACTTCAAAAGGAAGTGTTTTTGGTAGAGTTGGTAGATTCTATATCGAAGTCGAAAGAACCAATGTCACATCT TAAAGCAGTTTACTTCCTTCGCCCAACATCGGAGAATATTCAGCATTTGCGGCGTCAGCTGGCTAATCCTAGATTCGGAGAGAGTCATTTATTTTTCTCC AACATTTTGAAGGATACTCAGATTCATATCCTAGCTGATTCGGATGAACAGGAAGTTGTGCAGCAAGTGCAGGAGTATTATGGAGACTTTGTTGCTATTG ATCCTTATCACTTCACTTTGAACATCCCTTCAAATCACATGTATATGCTCCCAGCCGTTGTAGATCCTCCAGGTTTGCAGCACTTCTGTGATAGGGTTGT TGATGGTATAGCAGCAGTCTTTTTGGCATTGAAACGAAGACCGGTTATTCGATATCAAAGGACCTCTGATATTGCAAAAAGGGTAGCACAGGAAACATCA AAGCTGATGTACCAACAGGAAAGTGGCCTTTTTGATTTCAGACGTACAGAAATTTCTCCTCTGTTGCTTATAGTTGATCGAAGGGATGACCCCGTTACAC CATTACTAAACCAATGGACATATCAGGCTATGGTTCATGAATTGATAGGTATTCATGATAACAAAGTGGACTTGAGTAGCATCGGCAAATTACCAAAAGA TCAGCAGGAGGTTGTATTGTCATCAGAGCAAGATGCCTTCTTCAAAGCTAATATGTACGAGAACTTTGGAGATATTGGAATGAACATCAAGAAGATGGTG GATGATTTTCAGCAAGCTGCAAAAAGTAACCAAAATATCCAAACAATAGAAGACATGGCCAAGTTTGTTGACAATTACCCTGAGTACAGAAAAATGCATG GCAATGTTTCAAAGCATGTGACATTGGTCACAGAAATGAGCAAGATAGTTGAAGAGCGAAGGCTCATGTTAGTTTCAGAAATGGAACAGGATTTGGCTTG CAATAGTGGGCAAGTGGCTGCATTTGAGGCAGTGACAAATCTTCTGAACAATGAAAATGTTTCTGATATTGACTGTCTACGCTTGGTGATGCTATATGCA TTGCACTATGAGAAGGAGAGCCCTGTTCAGTTGATGCAGCTTTTTAACAAACTGGCTTCTCGATCTCCCAAGTACAAGCCTGGGCTAGTCCAATTCCTCC TGAAGCAAGCAGGTGTGGATAAGCGAACCGGTGATCTTTATGGGAACCGAGATCTTCTAAATATTGCTCGTAACATGGCTCGTGGTCTGAAGGGGGTTGA AAATGTATACATCCAACATCAGCCTCTTCTGTTCCAAACTATGGAAAGCATAATCAAGGGGAGATTGAGAGATGTGGACTATCCATTTGTTGGAAATCAC TTTCAACAGGGAAGGCCGCAAGATGTGGTTGTTTTCATTGTTGGTGGAACAACATACGAGGAGTCACGCTCCGTTGCTCTTCAAAATGCCAGCATTTCTG GAATTCGTTTTATAGTTGGTGGTTCCGCAGTTCTCAATTCTAAGAGGTTCCTGAAGGACCTGGAAGAAGCTCGGAGAATAGCAAAATCCAGCACCAATGT CGTTTGA
AA sequence Show only first row Show all	>Potri.002G071600.1 pacid=42778035 polypeptide=Potri.002G071600.1.p locus=Potri.002G071600 ID=Potri.002G071600.1.v4.1 annot-version=v4.1 MVLVSAARDYINRLLQDISGMKVLILDSQTVTIVSVVYSQTELLQKEVFLVELVDSISKSKEPMSHLKAVYFLRPTSENIQHLRRQLANPRFGESHLFFS NILKDTQIHILADSDEQEVVQQVQEYYGDFVAIDPYHFTLNIPSNHMYMLPAVVDPPGLQHFCDRVVDGIAAVFLALKRRPVIRYQRTSDIAKRVAQETS KLMYQQESGLFDFRRTEISPLLLIVDRRDDPVTPLLNQWTYQAMVHELIGIHDNKVDLSSIGKLPKDQQEVVLSSEQDAFFKANMYENFGDIGMNIKKMV DDFQQAAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERRLMLVSEMEQDLACNSGQVAAFEAVTNLLNNENVSDIDCLRLVMLYA LHYEKESPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYIQHQPLLFQTMESIIKGRLRDVDYPFVGNH FQQGRPQDVVVFIVGGTTYEESRSVALQNASISGIRFIVGGSAVLNSKRFLKDLEEARRIAKSSTNVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Potri.002G071600 [exp]	0	1	Pt-VPS45.2
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	3.46	0.9104
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Potri.001G108700 [exp]	4.12	0.9121
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	5.65	0.9065	NSF.1
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	7.48	0.8941
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	9.32	0.9081
AT5G26667		PYR6	P-loop containing nucleoside t...		Potri.002G134600 [exp]	14.28	0.8984
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	16.58	0.9029
AT5G21070			unknown protein		Potri.009G158800 [exp]	17.02	0.8915
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	21.21	0.8919
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	23.95	0.8980

Compare expression of checked genes

Potri.002G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.